Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L17
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    33   0.34 
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim...    29   5.5  
At2g47310.1 68415.m05906 flowering time control protein-related ...    29   5.5  
At5g18840.1 68418.m02239 sugar transporter, putative similar to ...    28   9.6  

>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
            helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 596  SRLXXGRGFCXKXPPXPGSPSXXPAGXEVPXVT*SPXTQGPXG-XRAVPXPGXXG 757
            SR   G  +    PP    P   PAG  +P V  SP   GP     A+P  G  G
Sbjct: 971  SRGRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPTRGPVG 1025


>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein similar
            to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
            {Clostridium acetobutylicum}; contains Pfam profiles
            PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
            DNA gyrase C-terminal domain beta-propeller
          Length = 950

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +2

Query: 311  GAWRLGVCQHGRGCEIHFRSVERSQAGKTKGRWHSIPACGCFRAGSLVEYN-GESXTAAR 487
            G W L VC++G G  +   S  RS+  +     +         A  +V Y+  E   +  
Sbjct: 823  GPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDE 882

Query: 488  QELIMSVTG---RRQXRDKTTITDRQPRGAAL 574
            Q +++S +G   R + RD  +I  R+ RG  L
Sbjct: 883  QVVLVSQSGTVNRIKVRD-ISIQSRRARGVIL 913


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 471 DSPLYSTRDPARKQPQAGMECQRPFVLPACERSTERKWISQPRPCWQTPSRQAPR 307
           D PL   R    K+P+ G E +  F  P   +  +  W SQP P W+      PR
Sbjct: 277 DQPLI-VRFADPKKPRLG-EQRSTFNTPPAMQHFDPNWHSQPYPQWENKEPAPPR 329


>At5g18840.1 68418.m02239 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family protein 1 [Arabidopsis thaliana]
           GI:14585699; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 482

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 416 IPACGCFRAGSLVEYNGESXTAARQELIMSV 508
           +  CG F  GS V Y+  + ++ RQ+L +S+
Sbjct: 50  VAVCGSFEFGSCVGYSAPTQSSIRQDLNLSL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,007
Number of Sequences: 28952
Number of extensions: 161621
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)