Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L16
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 499 PFSYILFDSIYRSYYVI 449
           P S++LF++IY  +YV+
Sbjct: 473 PVSFMLFNAIYWIFYVL 489


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 329 IHNKTDKITQLKDREKTRLFLNTMANITNSNSDKKQEELINDII 460
           IH  T K+ QLK  E    + +   NI + NS +K E   N+I+
Sbjct: 251 IHGLTKKVIQLKKEE----YKSGKRNIID-NSAQKTESKTNNIV 289


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 132 NGVNYFFHVLRRANLKWRF*DLNMYSSLGSF--*GKSKIKT 248
           N + +F +     NLKW     N   SLG++     SK+KT
Sbjct: 559 NHIEWFDYAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKT 599


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 597 KIRLTKSNPVMRGIKAKLLQRKELNTLKYXL*NQTTL 707
           KI+  K  P M   K +L   +ELN L+  L   T L
Sbjct: 34  KIQWRKPKPAMVEEKTQLRYLEELNALRTELGASTKL 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,810
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)