Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L12
(914 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 336 4e-91
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 305 9e-82
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 263 4e-69
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 233 4e-60
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 221 3e-56
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 143 6e-33
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 98 3e-19
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 97 7e-19
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 93 1e-17
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 92 2e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 89 2e-16
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 88 3e-16
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 87 8e-16
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 85 2e-15
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 85 3e-15
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 83 1e-14
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 82 2e-14
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 80 9e-14
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 74 6e-12
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 72 2e-11
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 69 2e-10
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 67 7e-10
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 64 5e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 62 1e-08
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.089
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 36 1.1
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.9
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 5.8
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.8
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 34 5.8
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 336 bits (826), Expect = 4e-91
Identities = 146/208 (70%), Positives = 175/208 (84%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
MSHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
NW+ WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPVD 652
MEIQ+NGGT+ +K+ WARE LE+ +PV+
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVN 208
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 305 bits (749), Expect = 9e-82
Identities = 135/207 (65%), Positives = 164/207 (79%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
MSHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
+W+ W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPV 649
MEIQLNGGT+ +KV WA+ LEK +PV
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPV 207
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 263 bits (645), Expect = 4e-69
Identities = 115/168 (68%), Positives = 135/168 (80%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 532
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 233 bits (571), Expect = 4e-60
Identities = 108/213 (50%), Positives = 147/213 (69%), Gaps = 3/213 (1%)
Frame = +2
Query: 23 SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 202
++MSH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR
Sbjct: 50 TNMSHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVR 109
Query: 203 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 382
+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRF
Sbjct: 110 DVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRF 169
Query: 383 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ--- 553
YKNW + GR + + K + ++RV+AHTQ++ L+ +
Sbjct: 170 YKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGV 229
Query: 554 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 652
KKAH+ EIQ+NGGTI K++ A+ LEK + +D
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRID 262
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 221 bits (539), Expect = 3e-56
Identities = 102/187 (54%), Positives = 133/187 (71%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
MS+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
NW+ ++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 569 MEIQLNG 589
MEIQ+ G
Sbjct: 175 MEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 143 bits (346), Expect = 6e-33
Identities = 83/189 (43%), Positives = 113/189 (59%)
Frame = +2
Query: 86 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 265
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 266 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 445
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 446 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 625
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 626 HLEKPIPVD 652
LE+ +PV+
Sbjct: 156 KLEQQVPVN 164
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 97.9 bits (233), Expect = 3e-19
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 406
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 407 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 571
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 572 EIQLNGGTIEDKVKWAREHLEKPIPVD 652
E+ L GG K++WA E L I +D
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGID 212
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 96.7 bits (230), Expect = 7e-19
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
M RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 379
DRPG + KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 92.7 bits (220), Expect = 1e-17
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 1/201 (0%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 589
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 590 GTIEDKVKWAREHLEKPIPVD 652
G + ++ WA E L + + ++
Sbjct: 172 GDLGAQLDWAAEKLGEELGIE 192
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 92.3 bits (219), Expect = 2e-17
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 2/201 (0%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 233 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXX 406
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI-------- 115
Query: 407 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLN 586
+ RK++E D + + VRV+ HT KL +KK I+EI++
Sbjct: 116 ---------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIG 165
Query: 587 GGTIEDKVKWAREHLEKPIPV 649
G IE+++ +A+E L K + +
Sbjct: 166 GKDIEERLNYAKEILGKQLNI 186
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 88.6 bits (210), Expect = 2e-16
Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 1/195 (0%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 589
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 590 GTIEDKVKWAREHLE 634
GT+ D++++A + +E
Sbjct: 167 GTLADRLEFAADLIE 181
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 88.2 bits (209), Expect = 3e-16
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 41/249 (16%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVH 154
M HRK+SAPRHGS+G P+KR+ + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 155 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 331
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 332 LLTVW---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRK 460
VW E + E + + N + E G K
Sbjct: 120 FGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFK 179
Query: 461 SIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 625
+E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 180 FLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
Query: 626 HLEKPIPVD 652
L + VD
Sbjct: 240 LLGNYVTVD 248
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 86.6 bits (205), Expect = 8e-16
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 10/213 (4%)
Frame = +2
Query: 41 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 220
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 221 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK- 388
N KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 389 ----NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQR 550
+Y + E+ + + + + MI+ + VR I TQ ++K +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK 177
Query: 551 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPV 649
KK +ME + G ++E+K + +E L K + V
Sbjct: 178 -KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRV 209
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 85.0 bits (201), Expect = 2e-15
Identities = 59/197 (29%), Positives = 92/197 (46%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 593 TIEDKVKWAREHLEKPI 643
+ ++ ++A E L + I
Sbjct: 174 DVRERFEYAVEILSEEI 190
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 84.6 bits (200), Expect = 3e-15
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 5/212 (2%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
M HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRR 379
D P S N KEI VT++E PP++ + + Y G ++T W+ + D RR
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRR 119
Query: 380 FYK-NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQK 556
+ + + + +L I+ + +++ + R++ TQ + + K
Sbjct: 120 IHSISSFLKDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGK 173
Query: 557 KA-HIMEIQLNGGTIEDKVKWAREHLEKPIPV 649
KA ++EIQ+ GG + ++ +A L K I +
Sbjct: 174 KAPDLVEIQIGGGEKKSQLDYALNILGKEITI 205
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 82.6 bits (195), Expect = 1e-14
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
M RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+
Sbjct: 1 MGARKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMID 57
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 346
DR +EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 58 DREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 82.2 bits (194), Expect = 2e-14
Identities = 61/199 (30%), Positives = 94/199 (47%)
Frame = +2
Query: 53 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 232
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 233 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 412
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 413 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 593 TIEDKVKWAREHLEKPIPV 649
E + A E L K + +
Sbjct: 166 PPEKALSLALEKLGKDLTI 184
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 79.8 bits (188), Expect = 9e-14
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 1/209 (0%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
M RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V
Sbjct: 1 MGARKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSID 59
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-Y 385
DR K++V T++ TPP++ +G+ GY + GL A V+AE + + +
Sbjct: 60 DREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISL 119
Query: 386 KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 565
KN + E + EK KK+ ++V I+ + L QKK +
Sbjct: 120 KN----------------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPY 159
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPVD 652
I E ++GG I + +E L K I +D
Sbjct: 160 IFEASVSGGDIPKQFAHVKELLGKEIKID 188
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 73.7 bits (173), Expect = 6e-12
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +2
Query: 50 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 223
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 224 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 346
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 71.7 bits (168), Expect = 2e-11
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
M HRKFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 367
DR + K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Frame = +2
Query: 29 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
MSHRKF PR GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 343
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 66.9 bits (156), Expect = 7e-10
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +2
Query: 50 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 229
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 230 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 64.1 bits (149), Expect = 5e-09
Identities = 39/110 (35%), Positives = 54/110 (49%)
Frame = -2
Query: 661 QTQIDRDRFLQMFSGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHL 482
+ +++R+ F ++F GP +FV DGTTV LDF V V DS N +V
Sbjct: 66 ENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDS 125
Query: 481 LEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 332
+ F F + F F E LL F+PV VE++S F + PDS Q
Sbjct: 126 GQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 56 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 235
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 236 KEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 367
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.089
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 101 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 238
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 36.3 bits (80), Expect = 1.1
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 500 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPIPVDLCLP 664
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+ + + P
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPLIIKIGYP 181
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 235 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 339
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.4
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 86 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 259
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 260 IIETPPMVCVGVVG 301
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 5.8
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -1
Query: 413 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 264
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 437 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 592
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 33.9 bits (74), Expect = 5.8
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +2
Query: 449 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 628
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 629 LEKPIPVD 652
EKPI ++
Sbjct: 195 KEKPISLE 202
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,434,422
Number of Sequences: 1657284
Number of extensions: 16129916
Number of successful extensions: 38356
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 36918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38318
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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