Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L12
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   292   5e-80
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   291   7e-80
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.5  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   6.5  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   8.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  292 bits (716), Expect = 5e-80
 Identities = 130/207 (62%), Positives = 165/207 (79%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPV 649
           MEIQ+NGG++ DKV+WAREH EK + +
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDI 205


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  291 bits (715), Expect = 7e-80
 Identities = 129/207 (62%), Positives = 165/207 (79%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 568
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 569 MEIQLNGGTIEDKVKWAREHLEKPIPV 649
           MEIQ+NGG++ DKV+WAREH EK + +
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDI 205


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 497 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 607
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 303 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 455
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 596 IEDKVKWAREHLEKPIPVDLCLP 664
           IE  + WA+E+++K     LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 205 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 41
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,694
Number of Sequences: 5004
Number of extensions: 65817
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)