BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_L12 (914 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 311 6e-85 SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 258 6e-69 SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 28 9.2 SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2 >SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) Length = 338 Score = 311 bits (763), Expect = 6e-85 Identities = 143/218 (65%), Positives = 169/218 (77%), Gaps = 2/218 (0%) Frame = +2 Query: 32 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 211 SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE + Sbjct: 1 SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60 Query: 212 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 391 +PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN Sbjct: 61 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120 Query: 392 WYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 571 W W D+ G+KSIE+DF M +YC V+RVI HTQ KLLK RQKKAHIM Sbjct: 121 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIM 180 Query: 572 EIQLNGG-TIEDKVKWAREHLEKPIPV-DLCLPR*MID 679 EIQ+NGG + +KV W RE LE P PV + P MID Sbjct: 181 EIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMID 218 >SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) Length = 347 Score = 258 bits (631), Expect = 6e-69 Identities = 113/171 (66%), Positives = 135/171 (78%) Frame = +2 Query: 17 LSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 196 L MSHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH+ Sbjct: 44 LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103 Query: 197 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 376 +RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163 Query: 377 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 529 RFYKNW W D+ G+KSIE+DF M +YC V+RVI HTQ Sbjct: 164 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214 >SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) Length = 1918 Score = 28.3 bits (60), Expect = 9.2 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Frame = +1 Query: 520 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 645 PH N + T G H NPT HR S GQ R +G P Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324 >SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 325 Score = 28.3 bits (60), Expect = 9.2 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +2 Query: 38 RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 154 R+F P+ G +G Y ++ R H GK + PK +P + + Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,069,509 Number of Sequences: 59808 Number of extensions: 527620 Number of successful extensions: 1174 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1173 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2645618622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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