Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L11
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.4  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 549 REEYPEQNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNILHRQRG 701
           R++   Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 224 RQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 420 VDSVLDVVRKGSESCDCLQG 479
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 667 FQLAGELRESHCM 629
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 644 RVALYGSTTVSDTLGEGTTEYVFM---ILFGVLFTDL*DEEGAHTGPGAATEGMCKLEAL 474
           R+++Y     SD    G +E V +   I+ G LF  + ++ GA  GP     G+ +LEA+
Sbjct: 32  RLSIYSGG--SDWRVAGRSESVVIPGDIVLGGLFP-VHEKGGASCGPNVYNRGVQRLEAM 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 559 TPNRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 669
           T + I + + ++ +PKVS+       ATLS  +++ N
Sbjct: 542 TDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,821
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)