Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L10
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 423  ATFAQFFGSASPFQEFFDLNGGG 491
            AT     G+ +P +E  D+NGGG
Sbjct: 1550 ATLTVTGGTIAPARELPDVNGGG 1572


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 368 EWSWWRSIIFLHVPRRPESNVRAVLWFGQPVPGILRSEWRWN 493
           E+  WR    ++  R+P +N  +V W          S W+WN
Sbjct: 144 EYYVWRDARIVNGTRQPPNNWLSVFW---------GSAWQWN 176


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 216 LEYHPDKNKAAGAEERFKEVAEAYEVLSDKKKRE 317
           ++ H D+         F+E A +  +L DKK  E
Sbjct: 383 VDIHDDRTLFFHPMSSFREFAVSTSILGDKKTAE 416


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 709 FLTQPRAISSNDTYKSCSMGGSCVFSFL 626
           F T    I S    + C+    C+FSFL
Sbjct: 127 FATTSTTIVSGAMAERCNFKAYCLFSFL 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,627
Number of Sequences: 438
Number of extensions: 5707
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)