Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L09
         (859 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   7.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 560 PMTMNVKIHHHQMSL 604
           P T N  +HHHQ SL
Sbjct: 127 PPTDNSHVHHHQTSL 141


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -1

Query: 607 LQTHLMMMNLYVHCHR----VDQDLHGTWIFQLQNL 512
           LQ +  + NL +H  +    +D ++ G W  +LQNL
Sbjct: 584 LQFNDGLKNLEIHVTKDTDTLDNEMRGAWPLKLQNL 619


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 566 TMNVKIHHHQMSLKMKKNQLKRSLNPSPFFVHHQKMMNHQ 685
           T+   +  H   L +++  L  S + +    HHQ+ M+H+
Sbjct: 286 TLGTMLSIHPSKLDVEQMNLLHSNDLNMHQQHHQQNMSHE 325


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 416 TTQSSNSTRALMKNLGATPF 357
           T Q S  TR  +KN  A+P+
Sbjct: 249 TVQLSTCTRTTLKNNRASPY 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,713
Number of Sequences: 336
Number of extensions: 2645
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)