Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L09
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    97   1e-20
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    77   2e-14
At5g21900.1 68418.m02539 expressed protein                             30   2.3  
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At1g10800.1 68414.m01239 hypothetical protein                          29   4.0  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   6.9  
At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containi...    28   9.1  
At2g22720.3 68415.m02692 expressed protein                             28   9.1  
At2g22720.2 68415.m02691 expressed protein                             28   9.1  
At2g22720.1 68415.m02693 expressed protein                             28   9.1  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 47/132 (35%), Positives = 84/132 (63%)
 Frame = +1

Query: 172 DDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQK 351
           DD+ +TKRVV+  K+KR+EE+   +  ++N  KI D+ S   +F+++ K   +   + + 
Sbjct: 43  DDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEA 102

Query: 352 EENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEI 531
            +    P  +I+ LV L+D++  A   +EA+K +S  NSKAL S++QKL+K  K +E +I
Sbjct: 103 VK---PPTLYIKTLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDI 159

Query: 532 SKFREDPDLPDD 567
           +K+RE P++ ++
Sbjct: 160 NKYREAPEVEEE 171


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 41/129 (31%), Positives = 75/129 (58%)
 Frame = +1

Query: 184 ETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENG 363
           +TKRVV+  K+KR+EE+   I ++++   I D      +FE+L K  +++          
Sbjct: 42  DTKRVVKPKKDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKSVKT------- 94

Query: 364 VAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFR 543
             P  +I+ LV L+D++    +  + ++ +S  NSKAL ++RQKL+K    ++ +I +FR
Sbjct: 95  --PTLYIKTLVMLEDFLNE--DNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFR 150

Query: 544 EDPDLPDDN 570
           E P++ DD+
Sbjct: 151 ESPEIEDDD 159


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 187 TKRVVRSMKEKRYEELEGI-IHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENG 363
           T R +R + +K    L G+ I   +  +K K FSS+L  FE+L   Y   A +V   +  
Sbjct: 295 TYRALRILADKFGSTLRGLSIGGCQGIKKHKGFSSSLYKFEKLN--YLSVAGLVSVNDGV 352

Query: 364 VAPRFFIRALVELD 405
           V   F  R+ +  D
Sbjct: 353 VRSFFMFRSSILTD 366


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 551 LIYPMTMNVKIHHHQMSLKMKKNQLKRSLNPSPF 652
           +++  T+N  IH  Q++     +QLK  LN +P+
Sbjct: 205 IVFNFTLNYSIHQIQINFNTLASQLKNGLNLAPY 238


>At1g10800.1 68414.m01239 hypothetical protein
          Length = 118

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 445 KALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLP 561
           +ALSK N   L +L +K  +  K  E E+++F+E+ D+P
Sbjct: 77  QALSKENRTLLETLAEK-DEVIKMLEEELNRFKENGDIP 114


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 442 RKALSKGNSKALTSLRQKLRKYTKDFEAEIS 534
           +  L  GN  A+  LR+K  K  K+FE E++
Sbjct: 553 KATLEDGNEVAVKRLREKTTKGVKEFEGEVT 583


>At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 257

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 503 STLKILKLKYPSSVKILIYPMTMNVKIHHHQMSLKMKKNQLKRSLNPSPFFV 658
           + +++   K+P+   I    +T N  IH    S  +K   L   + P PF V
Sbjct: 2   TAIRVCSRKFPTFASIFFQNITRNPSIHRISFS-NLKPKTLLHPIPPKPFTV 52


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 190 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 357
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 490 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 545


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 190 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 357
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 593 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 648


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 190 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 357
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 261 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,516
Number of Sequences: 28952
Number of extensions: 239263
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)