Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_L07
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   288   8e-79
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   279   3e-76
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   0.87 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.5  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   3.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.1  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   8.1  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   8.1  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   8.1  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  288 bits (706), Expect = 8e-79
 Identities = 142/201 (70%), Positives = 165/201 (82%)
 Frame = +2

Query: 92  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 271
           + RED VY AKLAEQAERY+ MVE MK+VAS   +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60

Query: 272 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 451
           SWRI+SSIEQKEE+KG   ++ +I+ YR ++E+EL  IC DIL VL+K+LIP++ + ESK
Sbjct: 61  SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120

Query: 452 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELXPTHPIRLGLALNFS 631
           VFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL PTHPIRLGLALNFS
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFS 180

Query: 632 XFYYEIXNSPDRXCRLAKAAF 694
            FYYEI NSPDR C LAK AF
Sbjct: 181 VFYYEILNSPDRACYLAKQAF 201


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  279 bits (685), Expect = 3e-76
 Identities = 137/201 (68%), Positives = 164/201 (81%)
 Frame = +2

Query: 92  SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 271
           + RE++VY AKLAEQAERY+EMVE MK VA  N   ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59

Query: 272 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLDKYLIPSSQTGESK 451
           SWRIISSIEQKEE++G   +  +I+ YR ++E EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60  SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119

Query: 452 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELXPTHPIRLGLALNFS 631
           VFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ EL PT P+RLGLALNFS
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFS 179

Query: 632 XFYYEIXNSPDRXCRLAKAAF 694
            FYYEI +SP+  C LAK  F
Sbjct: 180 VFYYEILDSPESACHLAKQVF 200


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +2

Query: 107  NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII 286
            N +   +A+Q   Y+E +  + N   R +S N       NL  +A K  I +    +   
Sbjct: 779  NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831

Query: 287  SSIEQKEETKGAEDKLNMIRAYRSQ 361
            +    +EET  ++  L ++R YR +
Sbjct: 832  NEETTREETPSSDKVLRIVRLYRDK 856


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/100 (23%), Positives = 46/100 (46%)
 Frame = +2

Query: 80  SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 259
           SST S    N    ++  Q+E Y ++ +   + +  ++SD E  +E R    V  +N + 
Sbjct: 45  SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103

Query: 260 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 379
              +S   +SS     ET+ + + L     + S  +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 447 DSPVCELGMRYLSRTPRMSEQMSRSSFSTW 358
           DSP   +G R +S+  R  +   RSS S+W
Sbjct: 481 DSPTKVIGKRNVSKASRTGQGRKRSSRSSW 510


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 335 NMIRAYRSQVEKELRDICSDILGVLDK 415
           N +RA + +++K+L+D+  +   +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 402 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 292
           P ++E  + +S S+W+  A ++ + +  P V  FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 209 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 87
           S+H   + +  H    P F  S    QLTLL +   YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 244 QERDRRPPRLLADHLLHRTEGRNKRRRRQIEHDQS 348
           Q RD  P R    +  HR   R +  RR +EH+++
Sbjct: 53  QRRDYSPARRRDRYERHRESVREESPRRPVEHERN 87


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 365 EKELRDICSDILGVLDKYLIPSSQTGESKVFYY 463
           E+ELRD+     G+   YL    +TG +K F +
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,678
Number of Sequences: 5004
Number of extensions: 45294
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)