Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_L06
(857 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 388 e-108
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 385 e-107
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 315 3e-86
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 5e-72
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 187 9e-48
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 8e-31
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 103 1e-22
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 8e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.2
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 3.7
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.7
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 4.8
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 4.8
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 4.8
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 29 4.8
SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16) 29 6.4
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 6.4
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 388 bits (955), Expect = e-108
Identities = 187/252 (74%), Positives = 213/252 (84%), Gaps = 2/252 (0%)
Frame = +3
Query: 90 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 269
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 270 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 449
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 450 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 629
SMVL KMKETAEAYLG+ V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA
Sbjct: 121 SMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAA 180
Query: 630 IAYGLDKKGTGERNVLIFDLGGGT--STCPSLHRGWYLRGEIHRRRHHWGGEDFDNRMVX 803
+AYGLDK +GE+NVLIFDLGGGT + ++ G + H GGEDFDNR+V
Sbjct: 181 LAYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFEVKSTAGDTHLGGEDFDNRLVN 240
Query: 804 HFVQEFXRXXKR 839
HFV EF R K+
Sbjct: 241 HFVAEFKRKYKK 252
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 385 bits (947), Expect = e-107
Identities = 187/251 (74%), Positives = 208/251 (82%), Gaps = 1/251 (0%)
Frame = +3
Query: 90 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 269
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 270 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 449
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 450 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 629
SMVLTKMKETAEAYLG V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAA
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 630 IAYGLDKKGTGERNVLIFDLGGGTSTCPSLH-RGWYLRGEIHRRRHHWGGEDFDNRMVXH 806
IAYGLDKK ERNVLI+DLGGGT L + H GGEDFDN+MV H
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFEVKSTAGDTHLGGEDFDNKMVDH 240
Query: 807 FVQEFXRXXKR 839
FV++F + K+
Sbjct: 241 FVKQFKQKYKK 251
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 315 bits (773), Expect = 3e-86
Identities = 155/242 (64%), Positives = 187/242 (77%), Gaps = 2/242 (0%)
Frame = +3
Query: 108 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 284
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 285 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 464
T+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLT
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 465 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 644
KMKETAEAYLGK V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+
Sbjct: 824 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGM 883
Query: 645 DKKGTGERNVLIFDLGGGTSTCPSLH-RGWYLRGEIHRRRHHWGGEDFDNRMVXHFVQEF 821
DKK GE+N+L+FDLGGGT L H GGEDFD ++ HF++ +
Sbjct: 884 DKK-EGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQNVMEHFIKLY 942
Query: 822 XR 827
+
Sbjct: 943 KK 944
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 268 bits (656), Expect = 5e-72
Identities = 136/187 (72%), Positives = 147/187 (78%), Gaps = 25/187 (13%)
Frame = +3
Query: 90 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 269
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 270 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV- 446
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 447 ------------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQR 554
SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQR
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQR 180
Query: 555 QATKDAG 575
QATKDAG
Sbjct: 181 QATKDAG 187
Score = 173 bits (420), Expect = 2e-43
Identities = 92/135 (68%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +3
Query: 441 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 620
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 621 AAAIAYGLDKKGTGERNVLIFDLGGGT--STCPSLHRGWYLRGEIHRRRHHWGGEDFDNR 794
AAAIAYGLDKK ERNVLIFDLGGGT + S+ G + H H GGEDFDN
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKSTHGDT-HLGGEDFDNN 329
Query: 795 MVXHFVQEFXRXXKR 839
MV FV++F + K+
Sbjct: 330 MVDFFVKQFKQKYKK 344
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 187 bits (456), Expect = 9e-48
Identities = 104/252 (41%), Positives = 147/252 (58%), Gaps = 4/252 (1%)
Frame = +3
Query: 96 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 269
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 270 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEV 446
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 447 SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAA 626
V+ K++ AE L TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 627 AIAYGLDKKGTGERNVLIFDLGGGTSTCPSLH-RGWYLRGEIHRRRHHWGGEDFDNRMVX 803
A+AYGL KK G NV++ DLGGGT L+ +G + GG+DF+ R +
Sbjct: 210 ALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQGGMFVTMAMAGNNRLGGQDFNARFMQ 268
Query: 804 HFVQEFXRXXKR 839
+ +Q + R
Sbjct: 269 YLLQLIHKRFNR 280
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 131 bits (316), Expect = 8e-31
Identities = 75/193 (38%), Positives = 106/193 (54%), Gaps = 5/193 (2%)
Frame = +3
Query: 273 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 449
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 450 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 629
+M+ T++K TAE L V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 630 IAYGLDKKG---TGERNVLIFDLG-GGTSTCPSLHRGWYLRGEIHRRRHHWGGEDFDNRM 797
+AYG+ K+ RNV+ D+G C + L+ + GG DFD +
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIGHSSLQVCITAFLKGQLKVLSTAVEPNLGGRDFDYVL 297
Query: 798 VXHFVQEFXRXXK 836
V HF QEF K
Sbjct: 298 VEHFAQEFKTKYK 310
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 108 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 263
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 103 bits (248), Expect = 1e-22
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 26/118 (22%)
Frame = +3
Query: 396 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 575
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 576 TISGLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 671
TI+GL+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 74.1 bits (174), Expect = 1e-13
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Frame = +3
Query: 390 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 569
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 570 AGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGTS 704
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G ++
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASST 175
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 159 GKVEIIANDQGNRTTPSYVAFTDTERLI 242
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 168 EIIANDQGNRTTPSYVAFT-DTERL 239
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 672 VLIFDLGGGTSTCPSLH-RGWYLRGEIHRRRHHWGGEDFDNRMVXHFVQEFXR 827
+ ++DLGGGT L + + + GGEDFDN ++ + EF +
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVKATNGDTYLGGEDFDNTLLKFLIAEFKK 54
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 176 RQRPGQQDHSVLCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 346
RQ + +++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 276 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 178
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 294 RILCCWGSSPPGSWRH 247
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 294 RILCCWGSSPPGSWRH 247
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +3
Query: 456 VLTKMKETAEAYLGKT----------VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRI 605
V K T+E Y+G T + NA +T+P YF + +K G G+ +
Sbjct: 994 VTRKDNNTSETYVGLTENSFKTRRNKIYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--A 1051
Query: 606 INEPTAAAIAYGLDKKGTG 662
+++ I+Y LD+K TG
Sbjct: 1052 MSKERNQEISYKLDRKWTG 1070
>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
Length = 390
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 672 VLIFDLGGGTSTCPSLHRGWYLRGEIHRRRHHWGGEDFDNR 794
VL + G+ C RGW RG + H+ GGE+F NR
Sbjct: 317 VLACNYQDGSVMCQR-ERGWSSRGVVGGVLHNIGGEEFYNR 356
>SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)
Length = 351
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 826 LXNSWTKWXTMRLSKSS-PPQWCRRRWISPRRYHPRCK 716
L N++ +W ++ + S +WCRRR + +R++ K
Sbjct: 202 LLNAYDEWIQVKSRQGSGSKKWCRRRGLEEQRFYEMSK 239
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 36 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 122
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 484 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 305
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 304 RLASNIVL 281
++++ VL
Sbjct: 1166 KISNATVL 1173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,063,718
Number of Sequences: 59808
Number of extensions: 683624
Number of successful extensions: 2015
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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