Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K24
         (1602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56660.1 68414.m06516 expressed protein                             31   2.8  

>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 8/177 (4%)
 Frame = +3

Query: 195 KKXXQKXXKXKQKNKKXXRXXXNSKXKXXXKXPPXPXEXXKKKXXMXXXXGGXER-KXKN 371
           KK  +K  K K+++K         K +   K      +  KKK          E+   KN
Sbjct: 191 KKKPKKEKKQKEESKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKN 250

Query: 372 *KKRKXST---XKK*KTXXTKIKKNKXTRXXNXSXXXKNXXGXKXKTKXXXKEXKXR-KD 539
            KK K  +    KK K    K +K++ T   +     K   G K + +   K+ K     
Sbjct: 251 KKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDAT 310

Query: 540 EQENPXXKXXXXXXXRGXGKXKTXXK---IEXKXXKKXKKRIXXKHKXXQKEKXREE 701
           EQE            +   K K   K   I+    K+ K +   + +  QK+  ++E
Sbjct: 311 EQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKE 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,990
Number of Sequences: 28952
Number of extensions: 58054
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4327727808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)