Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K22
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 264 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDISSSLNXRG 145
           E+ G+   +G   ++L SG+    LD  GH    S+  RG
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGHAAFISMRHRG 213


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 456 YQRQRSSLQGKRSSVWLMRQRSTETRMTSKRRPSR 560
           Y RQ S  + +R  +  MR+R  E R  S R  S+
Sbjct: 55  YHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQ 89


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 239 TLITNPEYSSKYLR 280
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 411 FRYREVHQQGE-QDHHYQRQRSSLQGKRSSVWLMRQRSTETRMTSKRRPSRPRMHW 575
           F+  E  QQ + Q  H Q+Q+ +     +     +Q+  + +   +++  + + HW
Sbjct: 409 FKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHW 464


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -2

Query: 161 VSIXEGKGVLHQATADPAPPQTCHRAR*QPGQLHHKLR 48
           V I +G+G + +   D   P      R +  + HH +R
Sbjct: 48  VEIFDGRGTIFEGHDDREQPSVYPLLRFENPETHHPIR 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,838
Number of Sequences: 438
Number of extensions: 3430
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)