Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K21
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    35   0.067
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    35   0.067
Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    30   2.5  

>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 338 LKSSDLKILKAPVLSIKTQGRVPKTAKEFSIILPCVGNSSGVATFEIGLVLKNARGLPLK 517
           ++S D  +L  P++ I  +G VP++ ++F++   C G+ SG     +    K     PLK
Sbjct: 60  VESDDSSVL--PIVRIPLKGTVPESLQDFTVEYRCAGHRSGQFAVSLYFTFKYGNKEPLK 117

Query: 518 APL 526
             L
Sbjct: 118 VKL 120


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 338 LKSSDLKILKAPVLSIKTQGRVPKTAKEFSIILPCVGNSSGVATFEIGLVLKNARGLPLK 517
           ++S D  +L  P++ I  +G VP++ ++F++   C G+ SG     +    K     PLK
Sbjct: 81  VESDDSSVL--PIVRIPLKGTVPESLQDFTVEYRCAGHRSGQFAVSLYFTFKYGNKEPLK 138

Query: 518 APL 526
             L
Sbjct: 139 VKL 141


>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 299 VEIEEEILLQFDTLKSSDLKILKAPVLSIKTQGRVPKTAKEFSI 430
           VE EEE + + D  K++ +K +KAP  +  T      T+ EF +
Sbjct: 194 VEEEEEPIKKKDEGKTTHMKTVKAPAAASSTTAAAASTSTEFPV 237


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 299 VEIEEEILLQFDTLKSSDLKILKAPVLSIKTQGRVPKTAKEFSI 430
           VE EEE + + D  K++ +K +KAP  +  T      T+ EF +
Sbjct: 213 VEEEEEPIKKKDEGKTTHMKTVKAPAAASSTTAAAASTSTEFPV 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,938
Number of Sequences: 27780
Number of extensions: 391811
Number of successful extensions: 1174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)