Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K21
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.92 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 77  HQHSSCAEPRPHRGRSPH 24
           HQH   ++  PHRG SPH
Sbjct: 319 HQHHP-SQYHPHRGSSPH 335


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 123 IKQHDISLWIDERQVRMFSGISMQVFAIVNGHVSPY 230
           + +  I +W   R+++      M    IV  H+SPY
Sbjct: 47  LTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMSPY 82


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 368  APVLSIKTQGRVP 406
            +PVLS++TQG+ P
Sbjct: 1487 SPVLSVRTQGQAP 1499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 368  APVLSIKTQGRVP 406
            +PVLS++TQG+ P
Sbjct: 1483 SPVLSVRTQGQAP 1495


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 155 VDPQRDVVLFDRIPEPP 105
           VD QR +  FD +PE P
Sbjct: 29  VDAQRSLEFFDLLPEDP 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,170
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)