Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K21
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ...    36   0.047
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase...    29   3.1  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    29   4.1  
At5g42620.1 68418.m05188 expressed protein                             29   5.4  
At5g40740.1 68418.m04944 expressed protein                             29   5.4  
At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein co...    28   9.5  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    28   9.5  

>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
           ZF-HD homeobox protein-related predicted proteins,
           Arabidopsis thaliana
          Length = 334

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 122 RIPEPPATGSERERHHQHSSCAEPRPHRGRSPHAELVRPI 3
           +IP PP+T  E + HH+H     P P   RSP++    PI
Sbjct: 116 QIPPPPSTAVEYQPHHRHHPPPPPPPPPPRSPNSASPPPI 155


>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK4) identical to MAP kinase kinase
           4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
           gi_13265419
          Length = 366

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 170 PDLPLVDPQRDVVLFDRIPEPPATG 96
           PDL L  PQRDV L   +P PP +G
Sbjct: 22  PDLTLPLPQRDVSLAVPLPLPPTSG 46


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 119 IPEPPATGSERERHHQHSSCAEPRP 45
           +P P  T   R  H  HS+ ++PRP
Sbjct: 394 LPRPSVTAEARPLHQPHSNTSQPRP 418



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 161 PLVDPQRDVVLFDRIPEPPATGSERERHHQHSSCAEPRP 45
           P V  + D++    +P P  T   R  H   S   +P+P
Sbjct: 507 PAVQSKTDIINSTALPRPSVTTEARPLHQPRSKTPQPKP 545


>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 566 RTRXCDKKCAXQGWCTXXKICQCPXGVHG 652
           R R C   C   G CT   +C C  G  G
Sbjct: 630 RNRSCPNNCNGHGKCTTQGVCICENGFTG 658


>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 329 FDTLKSSDL-KILKAPVLSIKTQGRVPKTAKEFSIILPCVG 448
           FD+ +S D  K+++A +  +++QG +P++    S +  C G
Sbjct: 81  FDSAQSRDFRKVVQAIISELESQGALPRSNSRVSSLATCCG 121


>At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 638

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 284 LRKLHVEIE------EEILLQFDTLKSSDLKILKAP 373
           +RK H  I+      E IL QFD L+ ++ K+LK P
Sbjct: 59  IRKAHENIDRTLKAAEVILSQFDLLRQAETKVLKGP 94


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 293 LHVEIEEEILLQFDTLKSSDLKILKAPVLSIKTQGRVP 406
           +H   EEE+LL+   ++   LK+ K       T+G++P
Sbjct: 122 VHNMTEEELLLRASKIQEKTLKMTKKAAFMFLTRGKLP 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,510
Number of Sequences: 28952
Number of extensions: 348910
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)