Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K13
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34470.1 68414.m04283 permease-related low similarity to puri...    30   2.2  
At1g71900.1 68414.m08312 expressed protein                             28   6.6  
At1g17665.1 68414.m02187 expressed protein                             28   8.7  

>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 415 SYSISMIFAAGI*LFVLIEAVNTMVRGETDIKDMFTLLILTCFVKQ*NSL 266
           S S+  + A GI L +    +N ++  +T +   FTL++LTC + Q N L
Sbjct: 198 SLSVMSVKALGIALKLTFSGMNQLIYPQTWV---FTLIVLTCVITQMNYL 244


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 415 SYSISMIFAAGI*LFVLIEAVNTMVRGETDIKDMFTLLILTCFVKQ*NSL 266
           S S+  + A GI L +     N +   +T I   FTL++LTC V Q N L
Sbjct: 198 SLSVMSVKALGIALKLTFSGTNQLFYPQTWI---FTLVVLTCVVTQLNYL 244


>At1g17665.1 68414.m02187 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 105 FLQTDTTTDLRNKCSNNRFVYDASIFILVLGLR*NFVQLLLFAKGFLQHRAYWIKLFYCL 284
           F  T + T  + K   ++ V   +   L L     F   L+ AK  LQH++  IK  + +
Sbjct: 173 FTSTSSATQRKIKQQYDQLVKCNNAKGLTLAQVGEFANCLIEAKNELQHKSEVIKRKFSI 232

Query: 285 TKHVKIKSVNISF 323
           TK +  K+   SF
Sbjct: 233 TKALLFKADRSSF 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,055
Number of Sequences: 28952
Number of extensions: 204830
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)