Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K11
(848 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O60832 Cluster: H/ACA ribonucleoprotein complex subunit... 151 3e-35
UniRef50_O13473 Cluster: Centromere/microtubule-binding protein ... 142 1e-32
UniRef50_Q10KT9 Cluster: H/ACA ribonucleoprotein complex subunit... 141 2e-32
UniRef50_Q7QR24 Cluster: GLP_576_9913_8648; n=1; Giardia lamblia... 98 2e-19
UniRef50_Q2R1N7 Cluster: Kinetochore protein, putative; n=1; Ory... 97 7e-19
UniRef50_A3CSX1 Cluster: Pseudouridylate synthase; n=2; Methanom... 79 1e-13
UniRef50_Q2FRP0 Cluster: Pseudouridylate synthase; n=1; Methanos... 78 2e-13
UniRef50_A7I5M0 Cluster: Pseudouridylate synthase; n=1; Candidat... 76 1e-12
UniRef50_Q6L1A0 Cluster: Probable tRNA pseudouridine synthase B;... 76 1e-12
UniRef50_Q9YDC3 Cluster: Probable tRNA pseudouridine synthase B;... 76 1e-12
UniRef50_UPI00015BB216 Cluster: putative rRNA pseudouridine synt... 72 2e-11
UniRef50_Q18NV1 Cluster: Cbf5; n=2; Desulfurococcaceae|Rep: Cbf5... 71 4e-11
UniRef50_A3MS77 Cluster: Pseudouridylate synthase; n=2; Thermopr... 71 5e-11
UniRef50_Q9HIT4 Cluster: Probable tRNA pseudouridine synthase B;... 69 1e-10
UniRef50_Q8PV20 Cluster: Probable tRNA pseudouridine synthase B;... 69 1e-10
UniRef50_Q0JAU9 Cluster: Os04g0576400 protein; n=1; Oryza sativa... 69 2e-10
UniRef50_Q57612 Cluster: Probable tRNA pseudouridine synthase B;... 68 3e-10
UniRef50_Q975L5 Cluster: Probable tRNA pseudouridine synthase B;... 66 1e-09
UniRef50_P60346 Cluster: Probable tRNA pseudouridine synthase B;... 65 2e-09
UniRef50_Q0WVR7 Cluster: TRNA synthase-like protein; n=7; Eukary... 63 7e-09
UniRef50_A7PM10 Cluster: Chromosome chr14 scaffold_21, whole gen... 63 1e-08
UniRef50_A7D2R6 Cluster: Pseudouridylate synthase TruB domain pr... 62 1e-08
UniRef50_A0RUE0 Cluster: Pseudouridine synthase; n=2; Thermoprot... 62 1e-08
UniRef50_Q18GM5 Cluster: TRNA-pseudouridine synthase; n=1; Haloq... 62 2e-08
UniRef50_Q5UXH1 Cluster: Probable tRNA pseudouridine synthase B;... 62 2e-08
UniRef50_Q1VNK7 Cluster: TRNA pseudouridine synthase B; n=1; Psy... 61 3e-08
UniRef50_Q190V0 Cluster: TRNA pseudouridine synthase B; n=2; Des... 59 1e-07
UniRef50_A3AZ60 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q2AIH0 Cluster: TRNA pseudouridine synthase B; n=1; Hal... 58 4e-07
UniRef50_Q5NER4 Cluster: tRNA pseudouridine synthase B; n=11; Fr... 58 4e-07
UniRef50_Q6AJY7 Cluster: tRNA pseudouridine synthase B; n=1; Des... 58 4e-07
UniRef50_Q41BZ2 Cluster: TRNA pseudouridine synthase B; n=1; Exi... 57 5e-07
UniRef50_Q03WH8 Cluster: Pseudouridine synthase; n=1; Leuconosto... 57 6e-07
UniRef50_Q18NU4 Cluster: Cbf5; n=3; Sulfolobaceae|Rep: Cbf5 - Me... 57 6e-07
UniRef50_Q8R5X8 Cluster: tRNA pseudouridine synthase B; n=3; Fus... 56 9e-07
UniRef50_Q8Y7F3 Cluster: tRNA pseudouridine synthase B; n=31; Ba... 56 1e-06
UniRef50_A6C3H8 Cluster: tRNA pseudouridine synthase B; n=1; Pla... 56 1e-06
UniRef50_Q9Z5I4 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 56 1e-06
UniRef50_A4A2R8 Cluster: TRNA pseudouridine synthase B; n=1; Bla... 55 2e-06
UniRef50_Q67P83 Cluster: tRNA pseudouridine synthase B; n=3; Bac... 55 2e-06
UniRef50_Q9CGH0 Cluster: tRNA pseudouridine synthase B; n=3; Lac... 55 2e-06
UniRef50_Q9RUQ9 Cluster: tRNA pseudouridine synthase B; n=2; Dei... 55 2e-06
UniRef50_Q2LWU1 Cluster: TRNA pseudouridine synthase B; n=1; Syn... 55 3e-06
UniRef50_Q1NKV8 Cluster: TRNA pseudouridine synthase B; n=2; del... 55 3e-06
UniRef50_P32732 Cluster: tRNA pseudouridine synthase B; n=19; Ba... 55 3e-06
UniRef50_A6NTY4 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_A3CMF2 Cluster: TRNA pseudouridine synthase B, putative... 54 5e-06
UniRef50_Q38W87 Cluster: tRNA pseudouridine synthase B; n=3; Lac... 54 5e-06
UniRef50_Q88VL5 Cluster: tRNA pseudouridine synthase B; n=4; Lac... 54 5e-06
UniRef50_Q18BH7 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 54 6e-06
UniRef50_A7H9F6 Cluster: tRNA pseudouridine synthase B; n=2; Ana... 54 6e-06
UniRef50_A1AMM4 Cluster: TRNA pseudouridine synthase B; n=2; Des... 53 8e-06
UniRef50_Q3ABA1 Cluster: tRNA pseudouridine synthase B; n=1; Car... 53 8e-06
UniRef50_A6GK85 Cluster: TruB; n=1; Plesiocystis pacifica SIR-1|... 52 1e-05
UniRef50_A5D2S3 Cluster: Pseudouridine synthase; n=1; Pelotomacu... 52 2e-05
UniRef50_A1ICX4 Cluster: Pseudouridylate synthase; n=1; Candidat... 52 2e-05
UniRef50_Q0C5Z2 Cluster: TRNA pseudouridine synthase B; n=1; Hyp... 52 2e-05
UniRef50_A7BD72 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_A4J5W9 Cluster: TRNA pseudouridine synthase B; n=1; Des... 52 2e-05
UniRef50_Q04ED7 Cluster: Pseudouridine synthase; n=1; Oenococcus... 51 3e-05
UniRef50_A7CZD5 Cluster: tRNA pseudouridine synthase B; n=1; Opi... 51 3e-05
UniRef50_Q5YSE0 Cluster: tRNA pseudouridine synthase B; n=31; Ac... 51 3e-05
UniRef50_A0LHM2 Cluster: TRNA pseudouridine synthase B; n=1; Syn... 51 4e-05
UniRef50_Q2RJM2 Cluster: tRNA pseudouridine synthase B; n=1; Moo... 51 4e-05
UniRef50_Q21H63 Cluster: TRNA pseudouridine synthase B; n=3; Gam... 50 7e-05
UniRef50_Q01SZ5 Cluster: TRNA pseudouridine synthase B; n=1; Sol... 50 7e-05
UniRef50_A5ZAJ6 Cluster: Putative uncharacterized protein; n=1; ... 50 7e-05
UniRef50_Q3ZXU5 Cluster: tRNA pseudouridine synthase B; n=3; Deh... 50 7e-05
UniRef50_Q9KA80 Cluster: tRNA pseudouridine synthase B; n=39; Ba... 50 7e-05
UniRef50_O66922 Cluster: tRNA pseudouridine synthase B; n=1; Aqu... 50 7e-05
UniRef50_Q5FJN8 Cluster: tRNA pseudouridine synthase B; n=5; Lac... 50 1e-04
UniRef50_Q8XJS1 Cluster: tRNA pseudouridine synthase B; n=12; Cl... 50 1e-04
UniRef50_Q89AF6 Cluster: tRNA pseudouridine synthase B; n=1; Buc... 50 1e-04
UniRef50_UPI000050FC6C Cluster: COG0130: Pseudouridine synthase;... 49 1e-04
UniRef50_Q9PQD7 Cluster: tRNA pseudouridine synthase B; n=1; Ure... 49 1e-04
UniRef50_Q4FVL3 Cluster: tRNA pseudouridine synthase B; n=3; Psy... 49 1e-04
UniRef50_Q9JYY1 Cluster: tRNA pseudouridine synthase B; n=5; Bet... 49 1e-04
UniRef50_Q8FPB3 Cluster: tRNA pseudouridine synthase B; n=5; Cor... 49 1e-04
UniRef50_Q8A2U2 Cluster: tRNA pseudouridine synthase B; n=23; Ba... 49 1e-04
UniRef50_Q1FIZ5 Cluster: TRNA pseudouridine synthase B; n=5; Clo... 49 2e-04
UniRef50_Q3A4A3 Cluster: tRNA pseudouridine synthase B; n=2; Des... 49 2e-04
UniRef50_Q1EWM9 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 48 2e-04
UniRef50_Q4ULJ9 Cluster: tRNA pseudouridine synthase B; n=12; Ri... 48 2e-04
UniRef50_Q46JB9 Cluster: tRNA pseudouridine synthase B; n=2; Pro... 48 2e-04
UniRef50_P59874 Cluster: tRNA pseudouridine synthase B; n=10; Pr... 48 2e-04
UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Re... 48 3e-04
UniRef50_P59880 Cluster: tRNA pseudouridine synthase B; n=2; Pro... 48 3e-04
UniRef50_Q820P2 Cluster: tRNA pseudouridine synthase B; n=3; Nit... 48 3e-04
UniRef50_Q1IPJ6 Cluster: TRNA pseudouridine synthase B; n=1; Aci... 48 4e-04
UniRef50_Q0AYI5 Cluster: Pseudouridylate synthase; n=1; Syntroph... 48 4e-04
UniRef50_A5CSY9 Cluster: TRNA pseudouridine synthase B; n=2; Act... 48 4e-04
UniRef50_A4M809 Cluster: TRNA pseudouridine synthase B; n=1; Pet... 48 4e-04
UniRef50_Q31GK3 Cluster: tRNA pseudouridine synthase B; n=1; Thi... 48 4e-04
UniRef50_Q6YQY6 Cluster: tRNA pseudouridine synthase B; n=4; Can... 48 4e-04
UniRef50_Q1LSL0 Cluster: TRNA pseudouridine synthase B; n=1; Bau... 47 5e-04
UniRef50_Q1GXD4 Cluster: TRNA pseudouridine synthase B; n=1; Met... 47 5e-04
UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b ... 47 5e-04
UniRef50_A6DGZ3 Cluster: tRNA pseudouridine synthase B; n=1; Len... 47 5e-04
UniRef50_Q820Z5 Cluster: tRNA pseudouridine synthase B; n=2; Tro... 47 5e-04
UniRef50_Q8RA40 Cluster: tRNA pseudouridine synthase B; n=3; The... 47 5e-04
UniRef50_Q39H28 Cluster: tRNA pseudouridine synthase B; n=55; Pr... 47 5e-04
UniRef50_A3WPV5 Cluster: TRNA pseudouridine 5S synthase; n=1; Id... 47 7e-04
UniRef50_Q72GS9 Cluster: tRNA pseudouridine synthase B; n=2; The... 47 7e-04
UniRef50_Q9RB36 Cluster: tRNA pseudouridine synthase B; n=4; Bac... 47 7e-04
UniRef50_Q1AW51 Cluster: TRNA pseudouridine synthase B; n=1; Rub... 46 0.001
UniRef50_A6EIQ4 Cluster: Putative tRNA pseudouridine synthase; n... 46 0.001
UniRef50_A5UZQ6 Cluster: tRNA pseudouridine synthase B; n=4; Chl... 46 0.001
UniRef50_A1HSB7 Cluster: TRNA pseudouridine synthase B; n=1; The... 46 0.001
UniRef50_A0UY57 Cluster: TRNA pseudouridine synthase B; n=2; Clo... 46 0.001
UniRef50_Q8ZBC4 Cluster: tRNA pseudouridine synthase B; n=129; G... 46 0.001
UniRef50_Q5LLT4 Cluster: tRNA pseudouridine synthase B; n=26; Al... 46 0.001
UniRef50_Q8WWH5 Cluster: Probable tRNA pseudouridine synthase 1;... 46 0.001
UniRef50_A4GHL8 Cluster: TRNA pseudouridine synthase B; n=3; Bac... 46 0.001
UniRef50_A4E6U4 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A1U5Z8 Cluster: TRNA pseudouridine synthase B; n=4; Gam... 46 0.001
UniRef50_A1A0A4 Cluster: TRNA pseudouridine synthase B; n=2; Bif... 46 0.001
UniRef50_Q319E0 Cluster: tRNA pseudouridine synthase B; n=6; Pro... 46 0.001
UniRef50_Q7MBB8 Cluster: tRNA pseudouridine synthase B; n=5; Cya... 46 0.001
UniRef50_P60344 Cluster: tRNA pseudouridine synthase B; n=5; Geo... 46 0.001
UniRef50_Q2BH44 Cluster: TRNA pseudouridine synthase B; n=1; Nep... 46 0.002
UniRef50_Q1MZS4 Cluster: TRNA pseudouridine synthase B; n=1; Oce... 46 0.002
UniRef50_A6GNL1 Cluster: tRNA pseudouridine synthase B; n=1; Lim... 46 0.002
UniRef50_Q9WZW0 Cluster: tRNA pseudouridine synthase B; n=6; The... 46 0.002
UniRef50_Q6F7I5 Cluster: tRNA pseudouridine synthase B; n=6; Pro... 46 0.002
UniRef50_UPI0000E87C37 Cluster: tRNA pseudouridine synthase B; n... 45 0.002
UniRef50_A6Q784 Cluster: tRNA pseudouridine synthase B; n=3; Eps... 45 0.002
UniRef50_Q6F1I4 Cluster: tRNA pseudouridine synthase B; n=3; Mol... 45 0.002
UniRef50_Q5ZRV6 Cluster: tRNA pseudouridine synthase B; n=5; Leg... 45 0.002
UniRef50_Q8CY45 Cluster: tRNA pseudouridine synthase B; n=2; Bif... 45 0.002
UniRef50_A6PMJ9 Cluster: tRNA pseudouridine synthase B; n=1; Vic... 45 0.003
UniRef50_A3VQI2 Cluster: TRNA pseudouridine synthase B; n=1; Par... 45 0.003
UniRef50_P59881 Cluster: tRNA pseudouridine synthase B; n=12; Cy... 45 0.003
UniRef50_P59877 Cluster: tRNA pseudouridine synthase B; n=2; Can... 45 0.003
UniRef50_Q2J732 Cluster: TRNA pseudouridine synthase B; n=5; Act... 44 0.004
UniRef50_Q6G5F5 Cluster: tRNA pseudouridine synthase B; n=2; Bar... 44 0.004
UniRef50_Q8YWR1 Cluster: tRNA pseudouridine synthase B; n=8; Cya... 44 0.004
UniRef50_Q0LD35 Cluster: TRNA pseudouridine synthase B; n=1; Her... 44 0.005
UniRef50_A4BAM7 Cluster: TRNA pseudouridine synthase B; n=1; Rei... 44 0.005
UniRef50_Q3J9B8 Cluster: tRNA pseudouridine synthase B; n=3; Gam... 44 0.005
UniRef50_UPI0000E46C2D Cluster: PREDICTED: similar to TruB pseud... 44 0.006
UniRef50_A3ER78 Cluster: Putative pseudouridine synthase; n=1; L... 44 0.006
UniRef50_P59884 Cluster: tRNA pseudouridine synthase B; n=1; Syn... 44 0.006
UniRef50_Q8GB99 Cluster: tRNA pseudouridine synthase B; n=1; Hel... 44 0.006
UniRef50_A4XL67 Cluster: TRNA pseudouridine synthase B; n=1; Cal... 43 0.008
UniRef50_Q6KHH8 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 43 0.008
UniRef50_O84096 Cluster: tRNA pseudouridine synthase B; n=9; Chl... 43 0.008
UniRef50_Q8K9H3 Cluster: tRNA pseudouridine synthase B; n=2; Buc... 43 0.008
UniRef50_Q2GEU5 Cluster: TRNA pseudouridine synthase B; n=1; Neo... 43 0.011
UniRef50_Q9PGR1 Cluster: tRNA pseudouridine synthase B; n=12; Xa... 43 0.011
UniRef50_Q057K1 Cluster: TRNA pseudouridine 55 synthetase; n=1; ... 42 0.015
UniRef50_Q3KI82 Cluster: tRNA pseudouridine synthase B; n=9; Gam... 42 0.015
UniRef50_Q9SMH4 Cluster: Trans-splicing factor Raa2, chloroplast... 42 0.015
UniRef50_A5IY15 Cluster: TRNA pseudouridine synthase B; n=1; Myc... 42 0.020
UniRef50_P60345 Cluster: tRNA pseudouridine synthase B; n=37; Al... 42 0.020
UniRef50_Q8KFS9 Cluster: tRNA pseudouridine synthase B; n=10; Ch... 42 0.020
UniRef50_Q4A5J8 Cluster: TRNA pseudouridine synthase B; n=1; Myc... 42 0.026
UniRef50_Q1VKI1 Cluster: TRNA pseudouridine synthase B; n=1; Psy... 42 0.026
UniRef50_P74696 Cluster: tRNA pseudouridine synthase B; n=2; Chr... 42 0.026
UniRef50_Q2RMR8 Cluster: tRNA pseudouridine synthase B; n=7; Alp... 42 0.026
UniRef50_Q8CXQ2 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 42 0.026
UniRef50_Q5FQM1 Cluster: tRNA pseudouridine synthase B; n=1; Glu... 42 0.026
UniRef50_Q0EZ77 Cluster: TRNA pseudouridine synthase B; n=1; Mar... 41 0.034
UniRef50_P59883 Cluster: tRNA pseudouridine synthase B; n=1; Pir... 41 0.034
UniRef50_A6QYY9 Cluster: Putative uncharacterized protein; n=1; ... 41 0.045
UniRef50_Q30WI7 Cluster: tRNA pseudouridine synthase B; n=4; Des... 40 0.060
UniRef50_Q9PNJ2 Cluster: tRNA pseudouridine synthase B; n=17; Ca... 40 0.060
UniRef50_Q6MMS4 Cluster: tRNA pseudouridine synthase B; n=1; Bde... 40 0.060
UniRef50_A0LE16 Cluster: TRNA pseudouridine synthase B; n=1; Mag... 40 0.10
UniRef50_Q98Q19 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 40 0.10
UniRef50_P59879 Cluster: tRNA pseudouridine synthase B; n=1; Myc... 40 0.10
UniRef50_Q609C2 Cluster: tRNA pseudouridine synthase B; n=1; Met... 40 0.10
UniRef50_UPI0000E0F5A1 Cluster: tRNA pseudouridine synthase B; n... 39 0.14
UniRef50_Q5PAY2 Cluster: tRNA pseudouridine synthase B; n=7; Ana... 39 0.14
UniRef50_Q0UE74 Cluster: Putative uncharacterized protein; n=1; ... 39 0.18
UniRef50_O51743 Cluster: tRNA pseudouridine synthase B; n=3; Bor... 39 0.18
UniRef50_Q7M9J1 Cluster: tRNA pseudouridine synthase B; n=2; Hel... 38 0.24
UniRef50_A5EWY7 Cluster: TRNA pseudouridine synthase B; n=1; Dic... 38 0.32
UniRef50_Q9C2G0 Cluster: Related to pseudouridine synthase; n=3;... 38 0.32
UniRef50_Q0U423 Cluster: Putative uncharacterized protein; n=1; ... 38 0.32
UniRef50_Q5NQ30 Cluster: tRNA pseudouridine synthase B; n=6; Sph... 38 0.32
UniRef50_Q601U7 Cluster: tRNA pseudouridine synthase B; n=3; Myc... 38 0.32
UniRef50_Q8I715 Cluster: TRNA pseudouridine synthase, putative; ... 37 0.56
UniRef50_Q980C2 Cluster: TRNA pseudouridine synthase subunit A; ... 37 0.56
UniRef50_Q2NBZ4 Cluster: TRNA pseudouridine synthase B; n=1; Ery... 37 0.74
UniRef50_Q5KKZ0 Cluster: Pseudouridylate synthase 4, putative; n... 36 0.97
UniRef50_Q4PA06 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_Q1CVV6 Cluster: TRNA pseudouridine synthase B; n=2; Cys... 36 1.7
UniRef50_Q4WVJ3 Cluster: Pseudouridine synthase; n=4; Pezizomyco... 35 2.2
UniRef50_O83859 Cluster: tRNA pseudouridine synthase B; n=1; Tre... 35 2.2
UniRef50_Q73NP8 Cluster: tRNA pseudouridine synthase B; n=1; Tre... 35 3.0
UniRef50_A7RVT7 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.9
UniRef50_Q6BNF1 Cluster: Debaryomyces hansenii chromosome E of s... 34 3.9
UniRef50_A7Q7M7 Cluster: Chromosome undetermined scaffold_60, wh... 34 5.2
UniRef50_O59721 Cluster: Probable tRNA pseudouridine synthase 4;... 34 5.2
UniRef50_Q2U678 Cluster: Pseudouridine synthase; n=6; Eurotiomyc... 33 6.9
UniRef50_UPI0000E82002 Cluster: PREDICTED: hypothetical protein;... 33 9.1
UniRef50_Q1VK38 Cluster: Putative uncharacterized protein; n=1; ... 33 9.1
UniRef50_Q7QZL7 Cluster: GLP_159_1151_2092; n=1; Giardia lamblia... 33 9.1
UniRef50_Q4UE86 Cluster: RNA modification (Pseudouridylation) pr... 33 9.1
UniRef50_Q2GY16 Cluster: Putative uncharacterized protein; n=1; ... 33 9.1
>UniRef50_O60832 Cluster: H/ACA ribonucleoprotein complex subunit 4;
n=78; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 4 - Homo sapiens (Human)
Length = 514
Score = 151 bits (365), Expect = 3e-35
Identities = 65/99 (65%), Positives = 85/99 (85%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
L+ R P LI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+LG
Sbjct: 180 LFQRPP-LIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLG 238
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYEXXK 845
VGGQM ELRRVRSG+ K+ M TMHD+L+AQW Y+ K
Sbjct: 239 VGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHK 277
Score = 114 bits (274), Expect = 3e-24
Identities = 51/74 (68%), Positives = 63/74 (85%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+WI+RIL+ EKTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEYV + L
Sbjct: 100 PSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRL 159
Query: 490 HSAVENIQKVTQGL 531
H+A+E ++++ L
Sbjct: 160 HNAIEGGTQLSRAL 173
Score = 110 bits (265), Expect = 4e-23
Identities = 47/68 (69%), Positives = 57/68 (83%)
Frame = +2
Query: 116 DFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINV 295
+F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+
Sbjct: 35 EFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINL 94
Query: 296 DKPSNPSS 319
DKPSNPSS
Sbjct: 95 DKPSNPSS 102
>UniRef50_O13473 Cluster: Centromere/microtubule-binding protein
CBF5; n=54; cellular organisms|Rep:
Centromere/microtubule-binding protein CBF5 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 474
Score = 142 bits (343), Expect = 1e-32
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
L+ R P LISAVKRQLRVRT+YDS L++FD +N+GVFW SCEAG+Y+RT+CVHLG++LG
Sbjct: 149 LFQRPP-LISAVKRQLRVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLG 207
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
VGG M ELRRVRSG + + T+HD+++AQW Y+
Sbjct: 208 VGGHMQELRRVRSGALSENDNLVTLHDVMDAQWVYD 243
Score = 116 bits (279), Expect = 8e-25
Identities = 52/74 (70%), Positives = 63/74 (85%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+WIKRIL+ EKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ AGKEYV + L
Sbjct: 69 PSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRL 128
Query: 490 HSAVENIQKVTQGL 531
H A+++ +++ +GL
Sbjct: 129 HDALKDEKELGRGL 142
Score = 89.0 bits (211), Expect = 1e-16
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = +2
Query: 116 DFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINV 295
+F I+P +T+ WPLLLK++D+L VR+ HYTP+P G SPLKR + Y+ SG IN+
Sbjct: 4 EFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINL 63
Query: 296 DKPSNPSS 319
DKPSNPSS
Sbjct: 64 DKPSNPSS 71
>UniRef50_Q10KT9 Cluster: H/ACA ribonucleoprotein complex subunit 4,
putative, expressed; n=8; Oryza sativa|Rep: H/ACA
ribonucleoprotein complex subunit 4, putative, expressed
- Oryza sativa subsp. japonica (Rice)
Length = 591
Score = 141 bits (341), Expect = 2e-32
Identities = 60/91 (65%), Positives = 78/91 (85%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P LISAVKRQLRVRT+Y+SKLL+ D D+++ VFW+SCEAG+Y+RT+CVHLGL+LGVG M
Sbjct: 202 PPLISAVKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHM 261
Query: 744 IELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
ELRRVRSGI G + M TMHD+++A+W+ +
Sbjct: 262 QELRRVRSGILGETDNMVTMHDVMDARWAMD 292
Score = 111 bits (268), Expect = 2e-23
Identities = 55/88 (62%), Positives = 66/88 (75%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+WIKR+L+ EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V
Sbjct: 118 PSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARF 177
Query: 490 HSAVENIQKVTQGLGEAAWSSIPEAPGL 573
H+AV + +V + L EA ++ + P L
Sbjct: 178 HAAVPDTARVARAL-EALTGAVFQRPPL 204
Score = 105 bits (251), Expect = 2e-21
Identities = 45/67 (67%), Positives = 55/67 (82%)
Frame = +2
Query: 119 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 298
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+D
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 299 KPSNPSS 319
KPSNPSS
Sbjct: 114 KPSNPSS 120
>UniRef50_Q7QR24 Cluster: GLP_576_9913_8648; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_576_9913_8648 - Giardia lamblia ATCC
50803
Length = 421
Score = 98.3 bits (234), Expect = 2e-19
Identities = 45/61 (73%), Positives = 51/61 (83%)
Frame = +1
Query: 298 QTEQPQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+T P EVV+WI+RIL+ EKTGHSGTLDP VTGCL+VC+DRATRLVKSQQ GKEYV
Sbjct: 56 KTAGPSSHEVVAWIRRILEVEKTGHSGTLDPGVTGCLLVCLDRATRLVKSQQLMGKEYVC 115
Query: 478 V 480
V
Sbjct: 116 V 116
Score = 94.3 bits (224), Expect = 3e-18
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P+ AVKRQLRVR +Y LL+F+ V SC+AG+Y+RT+CVH+GL++G M
Sbjct: 154 PKEGCAVKRQLRVREIYTLDLLEFNFKTGQAVLRASCQAGTYMRTLCVHIGLLVGHEAYM 213
Query: 744 IELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
+ELRRVRSG K M T+HD+L++ W ++
Sbjct: 214 LELRRVRSGELTEKTNMVTLHDVLDSFWCWK 244
Score = 61.3 bits (142), Expect = 3e-08
Identities = 28/55 (50%), Positives = 41/55 (74%)
Frame = +2
Query: 155 DTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
DT+ + LLL+ F++L+VR+ YTP G SPL+RPI +++K G IN+DK + PSS
Sbjct: 8 DTSEFKLLLEGFNQLHVRSASYTPTQNGYSPLQRPIREHLKYGVINLDKTAGPSS 62
>UniRef50_Q2R1N7 Cluster: Kinetochore protein, putative; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Kinetochore
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 142
Score = 96.7 bits (230), Expect = 7e-19
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV- 501
VV+WIKR+L+ KTGHSGTLDPKVTG LIVC+D ATRLVKSQQ AGKEY V H+AV
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAVP 118
Query: 502 ENIQKVTQGLGEAAWSSIPEA 564
+ + +A SS P +
Sbjct: 119 DTARDARSRRSQAPCSSAPRS 139
>UniRef50_A3CSX1 Cluster: Pseudouridylate synthase; n=2;
Methanomicrobiales|Rep: Pseudouridylate synthase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 302
Score = 79.4 bits (187), Expect = 1e-13
Identities = 42/91 (46%), Positives = 60/91 (65%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
+Y R PR SAVKR LR+R + + ++LD D + +F V C+AG+YIRT+CVHLG LG
Sbjct: 100 IYQRPPRK-SAVKRSLRIRKIQEIEILDMDG--RLVLFRVRCDAGTYIRTLCVHLGYALG 156
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
M ELRR+RSG + + T+H++ +A
Sbjct: 157 TCAHMEELRRIRSG-SFDETTIVTLHELADA 186
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +V +W+ IL + GH+GTLDP+V+G LIV A RL + KEYV + L
Sbjct: 22 PSSHQVAAWVGGIL-GRRVGHAGTLDPQVSGVLIVMFGGAVRLAPVLLSHNKEYVCLMRL 80
Query: 490 H 492
H
Sbjct: 81 H 81
>UniRef50_Q2FRP0 Cluster: Pseudouridylate synthase; n=1;
Methanospirillum hungatei JF-1|Rep: Pseudouridylate
synthase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 310
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/91 (42%), Positives = 62/91 (68%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
+Y R P+ SAVKR LR+R +++ ++L +D + +F V C++G+YIR++C H+G+ G
Sbjct: 106 IYQRPPKR-SAVKRALRIREIHELEMLG--RDGRLVLFRVKCDSGTYIRSLCHHIGMACG 162
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
VGG M+ELRR RSG K+ T+H + +A
Sbjct: 163 VGGAMVELRRTRSGPFSEKD-CVTLHTLRDA 192
Score = 57.6 bits (133), Expect = 4e-07
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +V +W++ I GH+GTLDP V+G L++ + RA RL KEYVA+ L
Sbjct: 27 PSSHQVAAWVREITGVSSVGHTGTLDPPVSGVLVILLGRAVRLTTILHQDDKEYVALLRL 86
Query: 490 HSAVENIQ 513
V + +
Sbjct: 87 QGDVSDAE 94
>UniRef50_A7I5M0 Cluster: Pseudouridylate synthase; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Pseudouridylate synthase -
Methanoregula boonei (strain 6A8)
Length = 322
Score = 76.2 bits (179), Expect = 1e-12
Identities = 42/91 (46%), Positives = 59/91 (64%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
+Y R PR SAVKR LR+RT+ ++LD + +F V C+AG+YIR++C H+GL LG
Sbjct: 111 IYQRPPRR-SAVKRLLRIRTIKKLEILDVQG--RLVLFKVECDAGTYIRSLCHHMGLALG 167
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
G M ELRR RSG ++ M T+H + +A
Sbjct: 168 TGAHMQELRRTRSG-AFDEQCMHTLHALQDA 197
Score = 51.2 bits (117), Expect = 3e-05
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +V +W+ +L GH+GTLDP+V+G L+V + A RL KEY+ + L
Sbjct: 33 PSSHQVAAWVGTMLGCP-VGHAGTLDPQVSGILLVMLGNAVRLAPLLLKHDKEYICLMRL 91
Query: 490 HSAVE 504
H V+
Sbjct: 92 HKEVD 96
>UniRef50_Q6L1A0 Cluster: Probable tRNA pseudouridine synthase B;
n=2; Thermoplasmatales|Rep: Probable tRNA pseudouridine
synthase B - Picrophilus torridus
Length = 349
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P + SAV R+LR+R +Y+ +LL+ D+ +F V CE+G+YIRT+C +G +LG GGQM
Sbjct: 99 PPVRSAVSRELRIREIYNLELLEMDE--KFVLFKVCCESGTYIRTLCTDIGYVLGSGGQM 156
Query: 744 IELRRVRSG 770
ELRR R+G
Sbjct: 157 AELRRTRTG 165
Score = 53.6 bits (123), Expect = 6e-06
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P ++ SWI+ I + GH GTLDP V+G L++ + +AT+L+ KEYV+V
Sbjct: 16 PTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDIVHRESKEYVSVLRT 75
Query: 490 HSAVEN 507
+ ++
Sbjct: 76 YDKYDH 81
>UniRef50_Q9YDC3 Cluster: Probable tRNA pseudouridine synthase B;
n=24; Thermoprotei|Rep: Probable tRNA pseudouridine
synthase B - Aeropyrum pernix
Length = 354
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+WIKR+L + GH GTLDPKVTG L V ++R TR++ + ++ KEYV V L
Sbjct: 67 PTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGTVMHSSKEYVCVMQL 126
Query: 490 HSAVE 504
H VE
Sbjct: 127 HRPVE 131
Score = 68.1 bits (159), Expect = 3e-10
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +3
Query: 546 ELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLML 725
E+Y + P L S+VKR LR R V+ +LL++ + V CEAG+Y+R +C +GL+L
Sbjct: 145 EIYQKPP-LRSSVKRALRTRRVFRIELLEYTG--KYALLRVDCEAGTYMRKLCWDIGLVL 201
Query: 726 GVGGQMIELRRVRSGIQGXKEG-MXTMHDILNA--QWSYE 836
GVG M ELRR+R+G G M + D+ A +W E
Sbjct: 202 GVGAHMRELRRIRTGPFSEDSGLMVRLDDVAYAVIRWREE 241
Score = 33.5 bits (73), Expect = 6.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 185 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
N R+ + + T +G P +RP+ Y++ G I VDKP P+S
Sbjct: 25 NTSRILYKYDEPTDPRYGYLPHERPLDVYLRYGMIVVDKPPGPTS 69
>UniRef50_UPI00015BB216 Cluster: putative rRNA pseudouridine
synthase; n=1; Ignicoccus hospitalis KIN4/I|Rep:
putative rRNA pseudouridine synthase - Ignicoccus
hospitalis KIN4/I
Length = 349
Score = 71.7 bits (168), Expect = 2e-11
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+WIKR+ E+ GH GTLDPKVTG L V + AT+++ +GKEYV V
Sbjct: 59 PTSHEVVAWIKRMFGLERAGHGGTLDPKVTGVLPVALAEATKVIHYVMLSGKEYVMVIQF 118
Query: 490 HSAVENIQKVTQGL 531
H AV+ ++V + L
Sbjct: 119 HDAVKE-EEVIENL 131
Score = 70.5 bits (165), Expect = 5e-11
Identities = 38/97 (39%), Positives = 58/97 (59%)
Frame = +3
Query: 546 ELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLML 725
E+Y R P L S+VKRQLR + VY +L+F ++ + + V E+G+Y+R + LGL++
Sbjct: 137 EIYQRPP-LRSSVKRQLRTKKVYYIHVLEFWPERRMALVRVGSESGTYMRKLAHDLGLLV 195
Query: 726 GVGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
G G M ELRR RSG + M D+ A++ Y+
Sbjct: 196 GTGAHMRELRRTRSGPFHEDWNLVRMQDLSEAKFLYD 232
Score = 35.1 bits (77), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 203 VRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
+R T +G P KR + + V+ G +N+DKP P+S
Sbjct: 23 IREEAETDPKYGKEPWKRDVKELVELGVVNLDKPPGPTS 61
>UniRef50_Q18NV1 Cluster: Cbf5; n=2; Desulfurococcaceae|Rep: Cbf5 -
Thermodiscus maritimus
Length = 73
Score = 70.9 bits (166), Expect = 4e-11
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVEN 507
V+WIKR+ ++ GH GTLDPKVTG L V + R TR+V S ++ KEYV V LH+ VE
Sbjct: 1 VAWIKRMFNIKRAGHGGTLDPKVTGVLPVALQRMTRIVGSVIHSDKEYVCVMQLHAPVEE 60
Query: 508 IQKVTQGLGE 537
+++ + L E
Sbjct: 61 -ERLREVLNE 69
>UniRef50_A3MS77 Cluster: Pseudouridylate synthase; n=2;
Thermoproteaceae|Rep: Pseudouridylate synthase -
Pyrobaculum calidifontis (strain JCM 11548 / VA1)
Length = 333
Score = 70.5 bits (165), Expect = 5e-11
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EV +W+K+IL E+ GHSGTLDPKV+G L V + T+++ + A K Y+AV
Sbjct: 46 PTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPVAVAEGTKVLMALSRADKVYIAVAKF 105
Query: 490 HS--AVENIQKVTQGL 531
H VEN+++V Q L
Sbjct: 106 HGDVDVENLRRVLQEL 121
Score = 61.3 bits (142), Expect = 3e-08
Identities = 40/97 (41%), Positives = 55/97 (56%)
Frame = +3
Query: 546 ELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLML 725
E+Y + P L SAVKRQLR R VY +LL+ D V + EAG+Y R + LG +L
Sbjct: 124 EIYQKPP-LRSAVKRQLRTRRVYSLELLELDG--RYAVLKMHVEAGTYARKLIHDLGEIL 180
Query: 726 GVGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
GVG M ELRRV E + T+ D+ +A + ++
Sbjct: 181 GVGANMRELRRVAVSCFTEDEAV-TLQDLADAYYIWK 216
>UniRef50_Q9HIT4 Cluster: Probable tRNA pseudouridine synthase B;
n=3; Thermoplasma|Rep: Probable tRNA pseudouridine
synthase B - Thermoplasma acidophilum
Length = 365
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P + SAV R LR++TVY LL+ +D+ + +F V CE+G+YIRT+C +G + G GGQM
Sbjct: 101 PPVRSAVARSLRIKTVYSLDLLE-KKDRLV-LFHVKCESGTYIRTLCTDIGYVSGKGGQM 158
Query: 744 IELRRVRSG 770
++LRR +G
Sbjct: 159 VDLRRTSTG 167
Score = 57.2 bits (132), Expect = 5e-07
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 304 EQPQLP---EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
++PQ P +V W++ IL EK H GTLDP VTG L + I +A RLV + KEYV
Sbjct: 13 DKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHESPKEYV 72
Query: 475 AVFNLHSAV 501
V + +
Sbjct: 73 GVMRFYEDI 81
>UniRef50_Q8PV20 Cluster: Probable tRNA pseudouridine synthase B;
n=6; Euryarchaeota|Rep: Probable tRNA pseudouridine
synthase B - Methanosarcina mazei (Methanosarcina
frisia)
Length = 338
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/86 (41%), Positives = 56/86 (65%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P + SAVKR +RVRT+Y ++L+ + + F V CEAG+YIR +C +GL LG GG M
Sbjct: 136 PPIKSAVKRVIRVRTIYHLEVLEIEGTSVL--FRVGCEAGTYIRKLCHDIGLALGCGGHM 193
Query: 744 IELRRVRSGIQGXKEGMXTMHDILNA 821
LRR ++G ++ + T+H++ +A
Sbjct: 194 QGLRRTKAG-PFTEKTLITLHELKDA 218
Score = 62.1 bits (144), Expect = 2e-08
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EV +W+K IL GH+G+LDPKVTG L + +AT V + + +GKEY+ L
Sbjct: 53 PTSHEVAAWVKAILGVHTAGHAGSLDPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKL 112
Query: 490 HSAVENIQKVTQGLGEAAWSSIPEAP 567
H A+ QK+ + + E I + P
Sbjct: 113 HRAMP--QKLVRQVCEEFTGPIYQMP 136
Score = 40.3 bits (90), Expect = 0.060
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 206 RTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
++ +T +G P KRPI +Y++ G +N+DKP P+S
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTS 55
>UniRef50_Q0JAU9 Cluster: Os04g0576400 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os04g0576400 protein -
Oryza sativa subsp. japonica (Rice)
Length = 97
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/59 (61%), Positives = 39/59 (66%)
Frame = -1
Query: 500 TAECKLKTATYSLPAFCCDLTSLVARSMQTIRQPVTFGSSVPE*PVFSAFKIRFIHETT 324
+A K T TYSLPA CCDLT VARS QT+R PVT GSSVP PV + R IH TT
Sbjct: 20 SAAWKRATQTYSLPAPCCDLTRRVARSTQTMRLPVTLGSSVPLCPVLLTRRRRLIHATT 78
>UniRef50_Q57612 Cluster: Probable tRNA pseudouridine synthase B;
n=9; Euryarchaeota|Rep: Probable tRNA pseudouridine
synthase B - Methanococcus jannaschii
Length = 336
Score = 68.1 bits (159), Expect = 3e-10
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EV +W+K+IL +K GH GTLDPKVTG L V ++RAT+ + KEYV + +L
Sbjct: 56 PTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHL 115
Query: 490 H--SAVENIQKV 519
H ++ E+I +V
Sbjct: 116 HRDASEEDILRV 127
Score = 68.1 bits (159), Expect = 3e-10
Identities = 38/91 (41%), Positives = 60/91 (65%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
+Y R P L +AVKR+LR+R +++ +LLD D K++ +F V C++G+YIR +C +G LG
Sbjct: 135 IYQRPP-LKAAVKRRLRIRKIHELELLDKD-GKDV-LFRVKCQSGTYIRKLCEDIGEALG 191
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
M ELRR +SG K+ + + D+L+A
Sbjct: 192 TSAHMQELRRTKSGCFEEKDAVY-LQDLLDA 221
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 191 DRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
+ L V+ T +G +P +R I D +K G + VDKP P+S
Sbjct: 16 EELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTS 58
>UniRef50_Q975L5 Cluster: Probable tRNA pseudouridine synthase B;
n=11; Sulfolobaceae|Rep: Probable tRNA pseudouridine
synthase B - Sulfolobus tokodaii
Length = 237
Score = 66.1 bits (154), Expect = 1e-09
Identities = 35/94 (37%), Positives = 58/94 (61%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P + S+VKR+ R + +YD ++LD DK + +S + G+Y+R +C +G++LG G M
Sbjct: 41 PPVRSSVKRRTRKKKIYDIEILD--TDKRFILLRISSDPGTYMRKLCHDIGVILGCGAHM 98
Query: 744 IELRRVRSGIQGXKEGMXTMHDILNAQWSYEXXK 845
ELRR+RSGI K + T+ +I A + ++ K
Sbjct: 99 RELRRIRSGIFTEK-NLVTLQEISEALYMWKNCK 131
>UniRef50_P60346 Cluster: Probable tRNA pseudouridine synthase B;
n=12; Archaea|Rep: Probable tRNA pseudouridine synthase
B - Nanoarchaeum equitans
Length = 348
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +VV+W++ I+ K GH GTLDPKVTG L + I AT+++++ AGKEYVA+ +L
Sbjct: 69 PTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLPIAIGEATKVLQTLLIAGKEYVALMHL 127
Query: 490 HSAV 501
H V
Sbjct: 128 HKEV 131
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = +3
Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
P L SAVK++ R + VY K+++ D K++ +F VS + G YIR + +G+ LGVG M
Sbjct: 151 PPLRSAVKKRPRKKKVYCIKIIEID-GKDV-LFRVSTQGGVYIRKLIHDIGVKLGVGAHM 208
Query: 744 IELRRVRSG 770
ELRR++SG
Sbjct: 209 QELRRIKSG 217
Score = 33.9 bits (74), Expect = 5.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 233 FGNSPLKRPISDYVKSGFINVDKPSNPSS 319
+G P RPI +K IN+DKPS P+S
Sbjct: 43 WGEDPYNRPIERLLKYSVINLDKPSGPTS 71
>UniRef50_Q0WVR7 Cluster: TRNA synthase-like protein; n=7;
Eukaryota|Rep: TRNA synthase-like protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 540
Score = 63.3 bits (147), Expect = 7e-09
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQK 516
++R++K +K GH+GTLDP TG LIVC+ +AT++V Q K Y VF L A +
Sbjct: 341 LRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDA 400
Query: 517 VTQGLGEAAWSSIPE 561
+ + +W I +
Sbjct: 401 DSPVIQRESWEHIKD 415
Score = 33.1 bits (72), Expect = 9.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 636 DQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
D +N+ +F V C G+YIR++C L LG + LRR
Sbjct: 475 DDRQNL-IFRVICSKGTYIRSLCADLAKALGSCAHLTALRR 514
>UniRef50_A7PM10 Cluster: Chromosome chr14 scaffold_21, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_21, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 502
Score = 62.9 bits (146), Expect = 1e-08
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQK 516
++R+++ +K GH+GTLDP TG LIVC+ +AT+LV+S Q K Y +F L A
Sbjct: 303 LRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMVKGYSGIFRLGEATSTWDA 362
Query: 517 VTQGLGEAAWSSIPE 561
+ + W I +
Sbjct: 363 DSPVIQREPWEHIKD 377
Score = 35.5 bits (78), Expect = 1.7
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 636 DQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
D +N+ VF V+C G+YIR++C G LG + LRR
Sbjct: 437 DDRQNL-VFRVTCSKGTYIRSLCADFGKALGSCAHLAALRR 476
>UniRef50_A7D2R6 Cluster: Pseudouridylate synthase TruB domain
protein; n=1; Halorubrum lacusprofundi ATCC 49239|Rep:
Pseudouridylate synthase TruB domain protein -
Halorubrum lacusprofundi ATCC 49239
Length = 343
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +3
Query: 546 ELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLML 725
E+Y + PR SAV R+LR RT+YD +L+ D + + + CE+G+YIR +C +GL
Sbjct: 147 EIYQKPPRK-SAVTRRLRTRTIYDLDVLEVDDRQ--ALLRIRCESGTYIRKLCHDIGLAT 203
Query: 726 GVGGQMIELRR 758
GVG M LRR
Sbjct: 204 GVGAHMGHLRR 214
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +1
Query: 370 HSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
H+GTLDPKVTGCL ATR + KEYV+V LH +
Sbjct: 90 HAGTLDPKVTGCLPTLTGDATRAAQVFLEGSKEYVSVLELHGS 132
>UniRef50_A0RUE0 Cluster: Pseudouridine synthase; n=2;
Thermoprotei|Rep: Pseudouridine synthase - Cenarchaeum
symbiosum
Length = 333
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/82 (39%), Positives = 52/82 (63%)
Frame = +3
Query: 576 SAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELR 755
S+V R+ RV+T+++ ++L+ Q + + + VSCEAG+YIR + +G ++G G MIELR
Sbjct: 134 SSVLRRTRVKTIHEIEVLE--QKERLVLMRVSCEAGTYIRKLLYDMGEVVGSGASMIELR 191
Query: 756 RVRSGIQGXKEGMXTMHDILNA 821
R R G+ TMH++ A
Sbjct: 192 RTRVDHFTEGSGLVTMHELAEA 213
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P E V+W KRIL+ K GHSGTLDP+V+G L + + AT+ + KEYVAV
Sbjct: 47 PTSHEAVAWAKRILEIPKAGHSGTLDPQVSGVLPLGLGEATKALGVLLIGPKEYVAVGRF 106
Query: 490 HSAVENIQKV 519
H A+++ +K+
Sbjct: 107 H-ALQDSEKL 115
>UniRef50_Q18GM5 Cluster: TRNA-pseudouridine synthase; n=1;
Haloquadratum walsbyi DSM 16790|Rep: TRNA-pseudouridine
synthase - Haloquadratum walsbyi (strain DSM 16790)
Length = 339
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +V +W++ ++ E+ H+GTLDPKVTGCL + + ATRL KEY+AV
Sbjct: 33 PSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPILLGEATRLAPVFLEGTKEYLAVLEF 92
Query: 490 H 492
H
Sbjct: 93 H 93
Score = 60.5 bits (140), Expect = 5e-08
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
+Y + PR SAV R+LR RT+ +L+ D D + + CE+G+YIR +C LGL G
Sbjct: 111 IYQKPPRK-SAVSRRLRKRTIETLDILEVDSDAQQALLRIRCESGTYIRKLCHDLGLAAG 169
Query: 729 VGGQMIELRR 758
G M +LRR
Sbjct: 170 TGAHMGDLRR 179
>UniRef50_Q5UXH1 Cluster: Probable tRNA pseudouridine synthase B;
n=3; Halobacteriaceae|Rep: Probable tRNA pseudouridine
synthase B - Haloarcula marismortui (Halobacterium
marismortui)
Length = 314
Score = 62.1 bits (144), Expect = 2e-08
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P +V +WI+ ++ H GTLDPKVTGCL V + A R+ + NA KEYV V L
Sbjct: 47 PSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARMAQVFDNAVKEYVTVLEL 106
Query: 490 H 492
H
Sbjct: 107 H 107
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/92 (38%), Positives = 55/92 (59%)
Frame = +3
Query: 546 ELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLML 725
++Y + PR SAVKRQLR R ++ +L+ D+ + + V C +G+YIR +C +GL
Sbjct: 124 DIYQKPPRK-SAVKRQLRSRRIHSLDILE-QGDRRL-LLRVRCASGTYIRKLCHDIGLAA 180
Query: 726 GVGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
G G M +LRR +G + TMHD+++A
Sbjct: 181 GTGAHMGDLRRTATG-TFDDGSLSTMHDLVDA 211
>UniRef50_Q1VNK7 Cluster: TRNA pseudouridine synthase B; n=1;
Psychroflexus torquis ATCC 700755|Rep: TRNA
pseudouridine synthase B - Psychroflexus torquis ATCC
700755
Length = 230
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV IK +K +K GH+GTLDP TG LIVC + T+++ QN KEY F +
Sbjct: 25 DVVKKIKNTIKCKKVGHAGTLDPLATGLLIVCTGKNTKIINEIQNENKEYSGQFTIGKTT 84
Query: 502 ENIQKVTQGLGEAAWSSIPE 561
+ T+ + E S I +
Sbjct: 85 PSHDLETEFINENDISDISD 104
>UniRef50_Q190V0 Cluster: TRNA pseudouridine synthase B; n=2;
Desulfitobacterium hafniense|Rep: TRNA pseudouridine
synthase B - Desulfitobacterium hafniense (strain DCB-2)
Length = 294
Score = 59.3 bits (137), Expect = 1e-07
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV ++RIL K GH+GTLDP+VTG L +C+ +ATRL + N GK Y
Sbjct: 17 DVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQGKSY 66
Score = 43.2 bits (97), Expect = 0.008
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +3
Query: 657 VFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+F V C G+YIRT+C +G LG G M L R+RSG
Sbjct: 162 IFEVDCSKGTYIRTLCHDMGQTLGCGAHMSALIRLRSG 199
>UniRef50_A3AZ60 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 495
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQK 516
++R++ +K GH+GTLDP TG LIVC+ +AT++V Q K Y VF L A
Sbjct: 326 LRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDA 385
Query: 517 VTQGLGEAAWSSIPE 561
+ + W I +
Sbjct: 386 DSPVIQREPWEHIKD 400
>UniRef50_Q2AIH0 Cluster: TRNA pseudouridine synthase B; n=1;
Halothermothrix orenii H 168|Rep: TRNA pseudouridine
synthase B - Halothermothrix orenii H 168
Length = 303
Score = 57.6 bits (133), Expect = 4e-07
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV+WI+++ +K GH+GTLDP +G L VC+ + T+++ + K YVA L
Sbjct: 20 DVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPYLPDEVKGYVAEITLGVKT 79
Query: 502 ENIQKVTQGLGE-AAWSSIPEA 564
+ + Q + E W SI ++
Sbjct: 80 DTLDSEGQIIEENQKWESITDS 101
Score = 37.1 bits (82), Expect = 0.56
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
+KR+ R + +LD D K + +F V C G+YIR++ +G LG G + L R
Sbjct: 141 IKREPRQVEIKKINILDIDLPK-VKLF-VLCSPGTYIRSIARDIGEKLGCGAYLSFLVRT 198
Query: 762 RSG 770
RSG
Sbjct: 199 RSG 201
>UniRef50_Q5NER4 Cluster: tRNA pseudouridine synthase B; n=11;
Francisella tularensis|Rep: tRNA pseudouridine synthase
B - Francisella tularensis subsp. tularensis
Length = 302
Score = 57.6 bits (133), Expect = 4e-07
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+V+ +K + A+K GH+GTLDP TG L +C RAT++ + +A KEY+A L +
Sbjct: 24 KVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDADKEYIATIRL--GI 81
Query: 502 ENIQKVTQGLGEAAWSSIPEAPGLY 576
E +G A +IPE Y
Sbjct: 82 ETDSGDAEGEIIAKSINIPELSAEY 106
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +3
Query: 609 VYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+Y+ +LL+F+ D V C G+YIR++ + +G LG GG +I L+R +SG
Sbjct: 154 IYELELLEFNIDSL--KIRVKCSKGTYIRSLAIDIGKTLGCGGHLIALQRTQSG 205
>UniRef50_Q6AJY7 Cluster: tRNA pseudouridine synthase B; n=1;
Desulfotalea psychrophila|Rep: tRNA pseudouridine
synthase B - Desulfotalea psychrophila
Length = 246
Score = 57.6 bits (133), Expect = 4e-07
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDR-ATRLVKSQQNAGKEYVAVFNL 489
VVS ++RIL +K GH+GTLDP TG L+VC R AT+++ S + KEY+A L
Sbjct: 24 VVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMDGEKEYIATLCL 79
Score = 45.6 bits (103), Expect = 0.002
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLL---DFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIEL 752
VK+ R TV++ + L D + D V V C GSYIRT+ +G +LG G + +L
Sbjct: 144 VKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGSDIGKVLGCGAHLTDL 203
Query: 753 RRVRSGIQGXKEGM 794
RR +SG ++ +
Sbjct: 204 RRTKSGFFNVEDAL 217
>UniRef50_Q41BZ2 Cluster: TRNA pseudouridine synthase B; n=1;
Exiguobacterium sibiricum 255-15|Rep: TRNA pseudouridine
synthase B - Exiguobacterium sibiricum 255-15
Length = 302
Score = 57.2 bits (132), Expect = 5e-07
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
++R+ + +K GH+GTLDP+VTG L +C+ RAT+L + + GK YVA
Sbjct: 24 LRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDEGKRYVA 70
Score = 41.9 bits (94), Expect = 0.020
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXKEGM 794
++C G+YIRT+ V +G LG M ELRR SG+ E +
Sbjct: 172 IACGKGTYIRTLAVEIGEQLGYAAHMSELRRTSSGMMSETEAV 214
>UniRef50_Q03WH8 Cluster: Pseudouridine synthase; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep:
Pseudouridine synthase - Leuconostoc mesenteroides
subsp. mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 302
Score = 56.8 bits (131), Expect = 6e-07
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VVS ++RI+ +K GH+GTLDP V G L+V + +AT+L+ Q K Y+ L +
Sbjct: 23 DVVSRVRRIIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRPKSYIGEITLGFST 82
Query: 502 E 504
E
Sbjct: 83 E 83
Score = 35.5 bits (78), Expect = 1.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKL---LDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIEL 752
V+R +R ++D K + F + K + F + G+YIRT+ V G ++G+ M +L
Sbjct: 144 VERPVRKAVIHDFKRTSGIKFIEGKQVFKFEATVSKGTYIRTLAVDAGKIIGIPATMTQL 203
Query: 753 RR 758
R
Sbjct: 204 TR 205
>UniRef50_Q18NU4 Cluster: Cbf5; n=3; Sulfolobaceae|Rep: Cbf5 -
Metallosphaera sedula
Length = 73
Score = 56.8 bits (131), Expect = 6e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +1
Query: 334 WIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLH 492
W+K + + GH GTLDPKVTG L + + +AT+++ +GKEYV + +H
Sbjct: 3 WVKTMFNLPRVGHGGTLDPKVTGVLPIGLGKATKIMSVVTKSGKEYVCLMEVH 55
>UniRef50_Q8R5X8 Cluster: tRNA pseudouridine synthase B; n=3;
Fusobacterium nucleatum|Rep: tRNA pseudouridine synthase
B - Fusobacterium nucleatum subsp. nucleatum
Length = 287
Score = 56.4 bits (130), Expect = 9e-07
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+V+ +K+ LK +K GH+GTLDP G ++VC+ +AT+L + K Y+A F++ A
Sbjct: 17 DVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLEAKDKVYIADFDIGYAT 76
Query: 502 E 504
+
Sbjct: 77 D 77
>UniRef50_Q8Y7F3 Cluster: tRNA pseudouridine synthase B; n=31;
Bacillales|Rep: tRNA pseudouridine synthase B - Listeria
monocytogenes
Length = 304
Score = 56.0 bits (129), Expect = 1e-06
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+++IL +K GH+GTLDP+V G L +CI RAT+L + + GK YVA L
Sbjct: 22 LRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDEGKVYVAEITL 72
Score = 39.1 bits (87), Expect = 0.14
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXKEGMXTMHDI 812
++C G+YIRT+ V +G +LG M +L R RSG KE T+ +I
Sbjct: 169 IACGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGF-FKKEDCLTLTEI 216
>UniRef50_A6C3H8 Cluster: tRNA pseudouridine synthase B; n=1;
Planctomyces maris DSM 8797|Rep: tRNA pseudouridine
synthase B - Planctomyces maris DSM 8797
Length = 310
Score = 55.6 bits (128), Expect = 1e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV +++++K + GH+GTLDP TG L++C TRL++ Q KEY+ F L
Sbjct: 28 QVVDQVQKLIKPARVGHAGTLDPLATGVLVLCTGSNTRLIRLVQQQPKEYIGEFLL 83
Score = 38.3 bits (85), Expect = 0.24
Identities = 31/89 (34%), Positives = 43/89 (48%)
Frame = +3
Query: 504 EYSKSHTGXWRSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAG 683
+YS H R +L RG + + Q R VY+ +LLDF + + C +G
Sbjct: 127 QYSAVHING-RRAYDLARRG----KSFEIQPREVDVYEIELLDFSFPRF--QLRIVCGSG 179
Query: 684 SYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+YIR++ LG LGVG M L R R G
Sbjct: 180 TYIRSIGRDLGEQLGVGATMSALTRTRIG 208
>UniRef50_Q9Z5I4 Cluster: tRNA pseudouridine synthase B; n=1;
Mycobacterium leprae|Rep: tRNA pseudouridine synthase B
- Mycobacterium leprae
Length = 320
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ +RI + GH+GTLDP TG L++ +DRAT+++ A KEYVA L
Sbjct: 27 DVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGASKEYVATIRL 82
Score = 38.7 bits (86), Expect = 0.18
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C +G+YIR + LG GVGG + LRR R G
Sbjct: 182 VECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVG 216
>UniRef50_A4A2R8 Cluster: TRNA pseudouridine synthase B; n=1;
Blastopirellula marina DSM 3645|Rep: TRNA pseudouridine
synthase B - Blastopirellula marina DSM 3645
Length = 280
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL--HS 495
+ V+ + R ++ K GH+GTLDP TG LI C+ TRL++ Q K YV F L S
Sbjct: 17 DAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQQMPKRYVGQFELGKTS 76
Query: 496 AVENIQKVTQGLGEA 540
E+++ V + +A
Sbjct: 77 DTEDLEGVVTEIVDA 91
>UniRef50_Q67P83 Cluster: tRNA pseudouridine synthase B; n=3;
Bacteria|Rep: tRNA pseudouridine synthase B -
Symbiobacterium thermophilum
Length = 299
Score = 55.2 bits (127), Expect = 2e-06
Identities = 30/85 (35%), Positives = 44/85 (51%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV++++R L +K GH+GTLDP V G L VC+ RATRL + + K Y A A
Sbjct: 28 DVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCVGRATRLAEYIAGSDKAYRAEITFGVAT 87
Query: 502 ENIQKVTQGLGEAAWSSIPEAPGLY 576
+ + + EA S + Y
Sbjct: 88 DTQDGFGEVVAEADASHLTRGDVAY 112
Score = 38.3 bits (85), Expect = 0.24
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQD-KNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
V+R+ R ++ +LLDF + + V C G+Y+RT+ LG L VG + L R
Sbjct: 148 VEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCSKGTYVRTLAHDLGRFLQVGAHLSYLVR 207
Query: 759 VRSG 770
RSG
Sbjct: 208 TRSG 211
>UniRef50_Q9CGH0 Cluster: tRNA pseudouridine synthase B; n=3;
Lactococcus lactis|Rep: tRNA pseudouridine synthase B -
Lactococcus lactis subsp. lactis (Streptococcus lactis)
Length = 329
Score = 55.2 bits (127), Expect = 2e-06
Identities = 25/50 (50%), Positives = 36/50 (72%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV+ ++ ILK +K GH GTLDP VTG L V + ++TRL++ + AGK Y
Sbjct: 21 DVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Score = 37.9 bits (84), Expect = 0.32
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFW--VSCEAGSYIRTMCVHLGLML 725
Y+R + + R++ +++ + + D+ + F V C G+Y+RT+ V L L
Sbjct: 135 YARAGQTVDRPTREITIKSFVRTSPMMTDEAAGLVSFSFKVECSKGTYVRTLAVDLAEQL 194
Query: 726 GVGGQMIELRRVRS 767
G G M +L+R S
Sbjct: 195 GYAGHMSKLQRTAS 208
>UniRef50_Q9RUQ9 Cluster: tRNA pseudouridine synthase B; n=2;
Deinococcus|Rep: tRNA pseudouridine synthase B -
Deinococcus radiodurans
Length = 308
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/56 (41%), Positives = 40/56 (71%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ +R L ++ GH+GTLDP TG +++C+D +T+LV+ ++ KEY+A +L
Sbjct: 16 DVVNRARRALGTKRVGHTGTLDPLATGVVVLCVDDSTKLVQFMEHDTKEYLAWVSL 71
>UniRef50_Q2LWU1 Cluster: TRNA pseudouridine synthase B; n=1;
Syntrophus aciditrophicus SB|Rep: TRNA pseudouridine
synthase B - Syntrophus aciditrophicus (strain SB)
Length = 312
Score = 54.8 bits (126), Expect = 3e-06
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV +KRIL K GH+GTLDP TG L +C++ AT+LV+ KEY A L
Sbjct: 17 KVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLSLDDKEYRATMLLGVTT 76
Query: 502 ENI 510
E +
Sbjct: 77 ETM 79
Score = 43.6 bits (98), Expect = 0.006
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V+C G+YIRT+C LG LG G M LRR+R G
Sbjct: 160 FRVACSKGTYIRTLCADLGERLGCGACMSVLRRLRCG 196
>UniRef50_Q1NKV8 Cluster: TRNA pseudouridine synthase B; n=2; delta
proteobacterium MLMS-1|Rep: TRNA pseudouridine synthase
B - delta proteobacterium MLMS-1
Length = 259
Score = 54.8 bits (126), Expect = 3e-06
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDR-ATRLVKSQQNAGKEYVAVFN 486
P +V ++R L +K GH+GTLDP +G L+VC+ R ATRLV+ KEY+A
Sbjct: 22 PSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAGDKEYLATLQ 81
Query: 487 LHSAVE 504
L A +
Sbjct: 82 LGVATD 87
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGV 731
Y+R +I R++++ ++ L+ D+ + V V C G+YIR++ +G LG
Sbjct: 140 YARRGEIIEKPPRRVKI---HELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQSLGC 196
Query: 732 GGQMIELRRVRSG 770
G ++ELRR+ SG
Sbjct: 197 GAHLLELRRLASG 209
>UniRef50_P32732 Cluster: tRNA pseudouridine synthase B; n=19;
Bacilli|Rep: tRNA pseudouridine synthase B - Bacillus
subtilis
Length = 309
Score = 54.8 bits (126), Expect = 3e-06
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+ V I+++LK +K GH+GTLDP+V+G L +C+ RAT++V+ K Y A L
Sbjct: 18 DCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKSKTYDAEITL 73
Score = 35.1 bits (77), Expect = 2.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V+C G+Y+RT+ V +G LG M L R SG
Sbjct: 168 FTVTCSKGTYVRTLAVMIGEKLGYPAHMSHLIRTASG 204
>UniRef50_A6NTY4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 289
Score = 54.0 bits (124), Expect = 5e-06
Identities = 29/64 (45%), Positives = 37/64 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+V + I+ +L + GH+GTLDP TG L V + RATR V+ GKEYVA L V
Sbjct: 18 DVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFAAEGGKEYVAGLRL-GVV 76
Query: 502 ENIQ 513
N Q
Sbjct: 77 TNTQ 80
Score = 43.2 bits (97), Expect = 0.008
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R+ R T+Y +++D + + V C G+Y+RT+C +G LG GG M LRR
Sbjct: 137 VEREPRPVTIYGLEVVDQTGPADY-LLRVQCSKGTYVRTLCHDIGQALGCGGCMYSLRRT 195
Query: 762 RS 767
+
Sbjct: 196 EA 197
>UniRef50_A3CMF2 Cluster: TRNA pseudouridine synthase B, putative;
n=7; Streptococcus|Rep: TRNA pseudouridine synthase B,
putative - Streptococcus sanguinis (strain SK36)
Length = 292
Score = 54.0 bits (124), Expect = 5e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+ V +++ILK +K GH GTLDP V G L + + +ATRLV+ Q GK Y
Sbjct: 17 DAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEGKVY 66
Score = 40.7 bits (91), Expect = 0.045
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGV 731
Y+R + + +RQ+ + + + + ++ ++ F V C G+Y+RT+ V LG LG
Sbjct: 131 YARAGQEVERPERQVTIYSFKRTSPISYEDEQARFRFRVKCSKGTYVRTLSVDLGAKLGF 190
Query: 732 GGQMIELRRVRS 767
M +L R S
Sbjct: 191 ASHMSQLTRTFS 202
>UniRef50_Q38W87 Cluster: tRNA pseudouridine synthase B; n=3;
Lactobacillaceae|Rep: tRNA pseudouridine synthase B -
Lactobacillus sakei subsp. sakei (strain 23K)
Length = 305
Score = 54.0 bits (124), Expect = 5e-06
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++RIL +K GHSGTLDP V G L +CI +AT++V ++GK Y L
Sbjct: 22 VRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLVHSGKVYTGEITL 72
Score = 36.3 bits (80), Expect = 0.97
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F C G+YIRT+ V G LG+ M +L R++SG
Sbjct: 169 FIAGCSKGTYIRTLAVDFGRKLGLPAVMSDLTRLKSG 205
>UniRef50_Q88VL5 Cluster: tRNA pseudouridine synthase B; n=4;
Lactobacillus|Rep: tRNA pseudouridine synthase B -
Lactobacillus plantarum
Length = 307
Score = 54.0 bits (124), Expect = 5e-06
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+ V+ I+R+ + K GHSGTLDP V G L +CI AT++V+ +GKEY
Sbjct: 18 DCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEY 67
Score = 42.3 bits (95), Expect = 0.015
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFD---QDKNIGVFWVSCEAGSYIRTMCVHLGLM 722
Y+R + +R + + + + +D Q + I F V+C G+Y+RT+ V +G +
Sbjct: 132 YARSGETVERPERHITISSFKQRQASTYDSATQTQTI-YFTVACSKGTYVRTLAVDVGKV 190
Query: 723 LGVGGQMIELRRVRSG 770
LGV M +L R++SG
Sbjct: 191 LGVPAVMSDLTRLKSG 206
>UniRef50_Q18BH7 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridium difficile|Rep: TRNA pseudouridine synthase B
- Clostridium difficile (strain 630)
Length = 301
Score = 53.6 bits (123), Expect = 6e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VVS +++IL +K GH+GTLDP +G L +CI +AT++ + N K Y+ L
Sbjct: 17 DVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKDKSYICELTL 72
Score = 41.1 bits (92), Expect = 0.034
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +3
Query: 576 SAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELR 755
S + + R + D K+L +K + F+V C G+Y+R++C +G LG G M L
Sbjct: 137 SEITLKTRRVNIKDIKILSIKGNKVM--FYVECSKGTYVRSICHDIGEYLGCGAHMSFLN 194
Query: 756 RVRSG 770
R SG
Sbjct: 195 RTSSG 199
>UniRef50_A7H9F6 Cluster: tRNA pseudouridine synthase B; n=2;
Anaeromyxobacter|Rep: tRNA pseudouridine synthase B -
Anaeromyxobacter sp. Fw109-5
Length = 315
Score = 53.6 bits (123), Expect = 6e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV ++RIL+A + GH+GTLDP TG L +C+ A +L + +A K Y A +A
Sbjct: 19 DVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLSDADKAYEATVAFGAAT 78
Query: 502 E 504
+
Sbjct: 79 D 79
Score = 35.1 bits (77), Expect = 2.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 555 SRGPRLISAVKRQLRVRTVYDSKLLDFD--QDK------NIGVFWVSCEAGSYIRTMCVH 710
+R + RQ+RV + +LL + QD+ + F V C G+Y+RT+
Sbjct: 133 ARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGKGTYVRTLAAD 192
Query: 711 LGLMLGVGGQMIELRRVRS 767
LG LGV + LRR +
Sbjct: 193 LGRALGVPAHLAALRRTEA 211
>UniRef50_A1AMM4 Cluster: TRNA pseudouridine synthase B; n=2;
Desulfuromonadales|Rep: TRNA pseudouridine synthase B -
Pelobacter propionicus (strain DSM 2379)
Length = 304
Score = 53.2 bits (122), Expect = 8e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VVS ++RIL + GH+GTLDP TG L V ++ AT+++ K Y A+ L
Sbjct: 18 DVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLDEGVKCYQALLRLGVVT 77
Query: 502 ENIQKVTQGLGEAAWSSI 555
+ + + L E +SS+
Sbjct: 78 DTLDMTGRILAEGDYSSV 95
Score = 44.8 bits (101), Expect = 0.003
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R+ R ++ +LL F+ + VSC G+Y+R++ LG LG G + ELRR+
Sbjct: 138 VERRARQVEIHSLELLSFEPP--LACLRVSCSRGTYVRSLADDLGAELGCGASLQELRRI 195
Query: 762 RSG 770
SG
Sbjct: 196 ASG 198
>UniRef50_Q3ABA1 Cluster: tRNA pseudouridine synthase B; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: tRNA
pseudouridine synthase B - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 288
Score = 53.2 bits (122), Expect = 8e-06
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQN-AGKEYVA--VFNLH 492
+VV+++++ LK K GH GTLDP G L V + +ATRL++ +N A KEY+A VF +
Sbjct: 17 DVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLENVAMKEYLAEIVFGIT 76
Query: 493 SAVENIQ 513
+A +++
Sbjct: 77 TATWDME 83
Score = 33.9 bits (74), Expect = 5.2
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGV--FWVSCEAGSYIRTMCVHLGLML 725
Y R + KR++ + ++ +LL+F DK ++ C G+YIR++ +G +L
Sbjct: 131 YQRQGEKVEPPKRKVFIDSI---ELLEFLADKPQPAVRLYIRCSRGTYIRSIANEIGNLL 187
Query: 726 GVGGQMIELRRVRSG 770
G + L R RSG
Sbjct: 188 KTGATLKFLLRTRSG 202
>UniRef50_A6GK85 Cluster: TruB; n=1; Plesiocystis pacifica
SIR-1|Rep: TruB - Plesiocystis pacifica SIR-1
Length = 385
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 304 EQPQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
E P +VV W++ L GH GTLDP +G L+VC+ T+LV + + K Y
Sbjct: 21 EGPTSHDVVGWVRWALGERSVGHCGTLDPPASGLLVVCVGEGTKLVDALTSVDKRY 76
>UniRef50_A5D2S3 Cluster: Pseudouridine synthase; n=1; Pelotomaculum
thermopropionicum SI|Rep: Pseudouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 316
Score = 52.0 bits (119), Expect = 2e-05
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV I+RI +K GH+GTLDP G L+VC+ ATRL + KEY
Sbjct: 17 DVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLLGEDKEY 66
Score = 36.7 bits (81), Expect = 0.74
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+SC G+Y+R++C +G LG G M L R R+G
Sbjct: 168 LSCSKGTYVRSLCHDMGSRLGCGAHMSFLVRTRAG 202
>UniRef50_A1ICX4 Cluster: Pseudouridylate synthase; n=1; Candidatus
Desulfococcus oleovorans Hxd3|Rep: Pseudouridylate
synthase - Candidatus Desulfococcus oleovorans Hxd3
Length = 303
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ +KR A K GH+GTLDP TG L+ I+RATRL + + K Y AV L
Sbjct: 21 KVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLASDKTYAAVMCL 76
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V+C +G+YIRT+C +G LG GG + L R R+G
Sbjct: 167 FEVTCSSGTYIRTLCADMGRALGCGGHLYALERTRAG 203
>UniRef50_Q0C5Z2 Cluster: TRNA pseudouridine synthase B; n=1;
Hyphomonas neptunium ATCC 15444|Rep: TRNA pseudouridine
synthase B - Hyphomonas neptunium (strain ATCC 15444)
Length = 313
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
+ V+ IKR+ AEK GH GTLDP G L + + +AT+ V+ +A KEYV
Sbjct: 28 QAVAIIKRLYNAEKVGHGGTLDPLADGILPIALGQATKTVQWAMDAHKEYV 78
>UniRef50_A7BD72 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 355
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+VVS ++R+ + K GH GTLDP TG L++ I +AT+L+ KEY A
Sbjct: 30 DVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIGKATKLLTWVSGHSKEYRA 81
Score = 35.5 bits (78), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C +G+Y+R + G LGVG + LRR R G
Sbjct: 202 VECSSGTYVRALARDAGEALGVGAHLTALRRTRVG 236
>UniRef50_A4J5W9 Cluster: TRNA pseudouridine synthase B; n=1;
Desulfotomaculum reducens MI-1|Rep: TRNA pseudouridine
synthase B - Desulfotomaculum reducens MI-1
Length = 310
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV +++R+ +K GH+GTLDP +G L VC+ +ATRL + + K Y A L
Sbjct: 17 DVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVTDGDKTYRAEITL 72
Score = 35.9 bits (79), Expect = 1.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 657 VFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVR 764
+F V+C G+Y+RT+C +G LG G M L R R
Sbjct: 165 LFDVACSKGTYVRTLCSDIGKELGCGAYMSFLLRSR 200
>UniRef50_Q04ED7 Cluster: Pseudouridine synthase; n=1; Oenococcus
oeni PSU-1|Rep: Pseudouridine synthase - Oenococcus oeni
(strain BAA-331 / PSU-1)
Length = 298
Score = 51.2 bits (117), Expect = 3e-05
Identities = 20/50 (40%), Positives = 36/50 (72%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV+ +++I + ++ GH+GTLDP VTG L++ + +AT+L+ Q K+Y
Sbjct: 18 DVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQENQKQY 67
>UniRef50_A7CZD5 Cluster: tRNA pseudouridine synthase B; n=1;
Opitutaceae bacterium TAV2|Rep: tRNA pseudouridine
synthase B - Opitutaceae bacterium TAV2
Length = 242
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+V++ ++ IL+ ++ GH+GTLDP TG LIV + +AT L + +A KEY L
Sbjct: 24 DVIARLRGILRMKRIGHAGTLDPMATGLLIVLVGKATSLSQYLMSADKEYSGTITL 79
>UniRef50_Q5YSE0 Cluster: tRNA pseudouridine synthase B; n=31;
Actinomycetales|Rep: tRNA pseudouridine synthase B -
Nocardia farcinica
Length = 306
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
+VV+ ++IL K GH+GTLDP TG L++ ++RAT+L+ K Y A L SA
Sbjct: 30 DVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLLTLTTKAYTATIRLGSA 88
Score = 40.7 bits (91), Expect = 0.045
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C +G+Y+R + LG LGVGG + LRR R G
Sbjct: 180 VECSSGTYVRALARDLGAALGVGGHLTALRRTRVG 214
>UniRef50_A0LHM2 Cluster: TRNA pseudouridine synthase B; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: TRNA
pseudouridine synthase B - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 306
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVE 504
+V+ +KR+L K GH GTLDP TG L+VC+++ATR ++Q G+ V F +E
Sbjct: 23 LVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRF--AEQLTGQTKVYRFTARLGIE 80
Score = 36.3 bits (80), Expect = 0.97
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 657 VFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXK--EGMXTMHD 809
V C G+Y+R + LG LG G ++ LRR+ G G + + MHD
Sbjct: 165 VLETKCSKGTYVRQLAADLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHD 217
>UniRef50_Q2RJM2 Cluster: tRNA pseudouridine synthase B; n=1;
Moorella thermoacetica ATCC 39073|Rep: tRNA
pseudouridine synthase B - Moorella thermoacetica
(strain ATCC 39073)
Length = 305
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV ++R+LK ++ GH GTLDP G L V + ATRL++ Q K Y A F L
Sbjct: 18 DVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGGDKAYRAEFIL 73
Score = 34.3 bits (75), Expect = 3.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNI--GVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELR 755
V+R R T+++ +L+ D + ++C G+YIRT+ G LGVG + L
Sbjct: 138 VERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADWGDYLGVGATLAFLL 197
Query: 756 RVRSG 770
R R+G
Sbjct: 198 RTRAG 202
>UniRef50_Q21H63 Cluster: TRNA pseudouridine synthase B; n=3;
Gammaproteobacteria|Rep: TRNA pseudouridine synthase B -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 313
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVF 483
V+ +KR+ A K GH+G+LDP TG L VC AT+ + ++ KEYV+ F
Sbjct: 28 VLQRVKRLFFANKAGHTGSLDPLATGVLPVCFGDATKFSQFLLDSDKEYVSTF 80
Score = 39.9 bits (89), Expect = 0.079
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQ----DKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIE 749
V+R+ R TVY+ +LL F + ++ VF C G+YIR++ +G L +GG + +
Sbjct: 147 VEREPRPVTVYEFELLAFRPGAVAEADVRVF---CSKGTYIRSLASDIGADLELGGHVAK 203
Query: 750 LRRVRSG 770
LRR ++G
Sbjct: 204 LRRTQAG 210
>UniRef50_Q01SZ5 Cluster: TRNA pseudouridine synthase B; n=1;
Solibacter usitatus Ellin6076|Rep: TRNA pseudouridine
synthase B - Solibacter usitatus (strain Ellin6076)
Length = 293
Score = 50.0 bits (114), Expect = 7e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV+ ++RI K +K GH GTLDP TG L + I+RATRL + + K Y
Sbjct: 17 DVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYTRSEKIY 66
Score = 36.7 bits (81), Expect = 0.74
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 609 VYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
VY+ LL + N+ C G+Y+R++ LG LG G + ELRR+ SG
Sbjct: 146 VYELTLLALEG--NLARLRAHCSGGTYMRSIAHDLGQALGCGAHLQELRRLASG 197
>UniRef50_A5ZAJ6 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 302
Score = 50.0 bits (114), Expect = 7e-05
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ ++ ILK +K GH GTLDP G L VC+ +AT+L K Y A L
Sbjct: 18 DVVAKLRGILKQKKIGHMGTLDPNAVGVLPVCLGKATKLCNLLSEKDKTYTATMLL 73
Score = 39.9 bits (89), Expect = 0.079
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVR 764
F V+C G+Y+RT+C +G LGVG M +L R R
Sbjct: 165 FHVTCSKGTYVRTLCYDIGKDLGVGACMEKLTRTR 199
>UniRef50_Q3ZXU5 Cluster: tRNA pseudouridine synthase B; n=3;
Dehalococcoides|Rep: tRNA pseudouridine synthase B -
Dehalococcoides sp. (strain CBDB1)
Length = 300
Score = 50.0 bits (114), Expect = 7e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ ++RI ++ GH GTLDP TG + V + R+TRL++ + K Y+A L
Sbjct: 17 DVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTYLAEIEL 72
Score = 33.5 bits (73), Expect = 6.9
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R RV T+Y +LL++ + + C G+YIR++ LG LG G + L R
Sbjct: 137 VERIPRVATIYGIELLNYTSP--VLRVRIECGHGTYIRSLAFDLGRKLGCGAYLKSLVRE 194
Query: 762 RSG 770
G
Sbjct: 195 AYG 197
>UniRef50_Q9KA80 Cluster: tRNA pseudouridine synthase B; n=39;
Bacilli|Rep: tRNA pseudouridine synthase B - Bacillus
halodurans
Length = 304
Score = 50.0 bits (114), Expect = 7e-05
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+ V+ ++R+LK +K GH+GTLDP V G L VCI AT++ + + K Y
Sbjct: 19 DCVAKLRRLLKTKKVGHTGTLDPDVYGVLPVCIGHATKVAQYMSDYPKAY 68
Score = 38.3 bits (85), Expect = 0.24
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F VSC G+Y+RT+ V +G LG M +L R +SG
Sbjct: 169 FNVSCSKGTYVRTLAVDIGKALGYPAHMSDLVRTKSG 205
>UniRef50_O66922 Cluster: tRNA pseudouridine synthase B; n=1;
Aquifex aeolicus|Rep: tRNA pseudouridine synthase B -
Aquifex aeolicus
Length = 287
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATR 435
EVV +K LKA K GH+GTLDP TG LI+ I++ATR
Sbjct: 17 EVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATR 54
Score = 41.9 bits (94), Expect = 0.020
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 606 TVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVR 764
TVY +LL + + F +G Y+R++ +G LG+GG M ELRR++
Sbjct: 144 TVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIGKKLGIGGYMKELRRLK 196
>UniRef50_Q5FJN8 Cluster: tRNA pseudouridine synthase B; n=5;
Lactobacillus|Rep: tRNA pseudouridine synthase B -
Lactobacillus acidophilus
Length = 297
Score = 49.6 bits (113), Expect = 1e-04
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV ++R L K GH+GTLDP+VTG L + I +AT+L++ K+Y
Sbjct: 18 DVVYHLRRALHIRKIGHAGTLDPEVTGVLPIAIGQATKLIELMHTRPKKY 67
>UniRef50_Q8XJS1 Cluster: tRNA pseudouridine synthase B; n=12;
Clostridium|Rep: tRNA pseudouridine synthase B -
Clostridium perfringens
Length = 294
Score = 49.6 bits (113), Expect = 1e-04
Identities = 18/40 (45%), Positives = 31/40 (77%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLV 441
+VV+ ++R+ K +K GH+GTLDP +G L VC+ +AT+++
Sbjct: 17 DVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKII 56
Score = 45.6 bits (103), Expect = 0.002
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 543 VELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 722
V LY + I V R+ R T+Y + + + + NI + V C G+YIR++C +G
Sbjct: 125 VRLYELARQGIE-VHREARKITIYSIENIKIESNDNIQMD-VCCSKGTYIRSLCYDIGEK 182
Query: 723 LGVGGQMIELRRVRSG 770
L VG M L R+++G
Sbjct: 183 LNVGATMTALERIQNG 198
>UniRef50_Q89AF6 Cluster: tRNA pseudouridine synthase B; n=1;
Buchnera aphidicola (Baizongia pistaciae)|Rep: tRNA
pseudouridine synthase B - Buchnera aphidicola subsp.
Baizongia pistaciae
Length = 302
Score = 49.6 bits (113), Expect = 1e-04
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
E + +K ILK +K GH+GTLDP TG L +C RAT+ + N K Y + L
Sbjct: 24 ETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKFSQFLMNFKKRYRVIAKL 79
Score = 40.3 bits (90), Expect = 0.060
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
+ R++R +Y+ K+L + + C G+YIRT+ +G L G +I LRR+
Sbjct: 143 ISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTLIEDVGEKLNCGAHVISLRRL 202
Query: 762 RSG 770
+ G
Sbjct: 203 QVG 205
>UniRef50_UPI000050FC6C Cluster: COG0130: Pseudouridine synthase;
n=1; Brevibacterium linens BL2|Rep: COG0130:
Pseudouridine synthase - Brevibacterium linens BL2
Length = 305
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
VVS I+R K GH+GTLDP TG L++ + R T+L+ K Y+A L SA
Sbjct: 23 VVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGVSKTYLATIRLGSA 80
Score = 37.1 bits (82), Expect = 0.56
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXKEGMXTMHDI 812
V C +G+Y+R + LG LGV G + LRR R G E + D+
Sbjct: 177 VDCSSGTYVRALARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMIPDDL 225
>UniRef50_Q9PQD7 Cluster: tRNA pseudouridine synthase B; n=1;
Ureaplasma parvum|Rep: tRNA pseudouridine synthase B -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 227
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+VV +KR++ A+K GH+GTLDP +G L++ I+ T+L+ K Y+A
Sbjct: 21 DVVQKVKRVIGAKKVGHAGTLDPNASGVLVLGINEGTKLLTKLILDNKSYIA 72
>UniRef50_Q4FVL3 Cluster: tRNA pseudouridine synthase B; n=3;
Psychrobacter|Rep: tRNA pseudouridine synthase B -
Psychrobacter arcticum
Length = 380
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +1
Query: 322 EVVSWIKRILKA-----EKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFN 486
+VVS +K + K+ +K GH+GTLDP TG L +C+ AT+ Q +A K Y A
Sbjct: 37 QVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLGEATKFSHYQLDADKSYQATIL 96
Query: 487 LHSAVENIQKVTQGLGEAAWSSIPE 561
L S + Q EA S+ +
Sbjct: 97 LGSQTDTGDADGQVTAEATISAFDD 121
>UniRef50_Q9JYY1 Cluster: tRNA pseudouridine synthase B; n=5;
Betaproteobacteria|Rep: tRNA pseudouridine synthase B -
Neisseria meningitidis serogroup B
Length = 307
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
+R+ AEK GH+G LDP TG L VC AT+ + +A K Y A L A
Sbjct: 33 RRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEA 85
Score = 36.7 bits (81), Expect = 0.74
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R+ R TVY + +FD K V V C G+YIRT+ + +G + LRR
Sbjct: 146 IERKARYITVYAIDIAEFDAPK--AVIDVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRT 203
Query: 762 RS 767
+
Sbjct: 204 ET 205
>UniRef50_Q8FPB3 Cluster: tRNA pseudouridine synthase B; n=5;
Corynebacterineae|Rep: tRNA pseudouridine synthase B -
Corynebacterium efficiens
Length = 297
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VVS ++R K GH+GTLDP TG L+V I+R TR + K Y A L
Sbjct: 23 DVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATTKAYDATIRL 78
Score = 39.1 bits (87), Expect = 0.14
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C +G+YIR++ LG LGVGG + LRR G
Sbjct: 173 VHCSSGTYIRSLARDLGAALGVGGHLTALRRTEVG 207
>UniRef50_Q8A2U2 Cluster: tRNA pseudouridine synthase B; n=23;
Bacteroidetes|Rep: tRNA pseudouridine synthase B -
Bacteroides thetaiotaomicron
Length = 240
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1
Query: 349 LKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+K K GH+GTLDP TG +I+C +AT+ ++ Q KEYVA L
Sbjct: 36 VKKLKVGHAGTLDPLATGVMILCTGKATKRIEEFQYHTKEYVATLRL 82
>UniRef50_Q1FIZ5 Cluster: TRNA pseudouridine synthase B; n=5;
Clostridiales|Rep: TRNA pseudouridine synthase B -
Clostridium phytofermentans ISDg
Length = 307
Score = 48.8 bits (111), Expect = 2e-04
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+V + ++ ILK +K GH+GTLDP G L VC+ AT+L + K Y AV L
Sbjct: 17 DVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLTDKDKVYEAVLTL 72
Score = 33.1 bits (72), Expect = 9.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGI 773
VSC G+YIR++C +G L GG M L R + I
Sbjct: 170 VSCSKGTYIRSLCRDIGEALQCGGCMKSLIRTQVSI 205
>UniRef50_Q3A4A3 Cluster: tRNA pseudouridine synthase B; n=2;
Desulfuromonadales|Rep: tRNA pseudouridine synthase B -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 306
Score = 48.8 bits (111), Expect = 2e-04
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V R+ R T++D +LL + NI F V C G+Y+RT+C +G+ LG G + LRR+
Sbjct: 137 VSRKPRRITIFDLQLLAVEPP-NI-TFDVHCSKGTYVRTICHDIGVKLGCGAHLTALRRL 194
Query: 762 RSGIQGXKEGM 794
RS KE +
Sbjct: 195 RSAPFDVKEAV 205
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
VV I+R+ K GH+GTLDP TG L+V + +ATR+++ K Y A
Sbjct: 18 VVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLMQENKVYRA 68
>UniRef50_Q1EWM9 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridiaceae|Rep: TRNA pseudouridine synthase B -
Clostridium oremlandii OhILAs
Length = 299
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VVS +++ L +K GH+GTLDP G L +CI +AT++ + + K+Y A L
Sbjct: 17 DVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLLDGKKKYRAELTL 72
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R R T+Y ++++ ++K I F V C G+YIRT+C +G +LG GG M L R
Sbjct: 136 IERAERTVTIYHIEIIEIFKEKVI--FDVLCSKGTYIRTLCKDIGEVLGCGGVMSFLLRT 193
Query: 762 RS 767
S
Sbjct: 194 AS 195
>UniRef50_Q4ULJ9 Cluster: tRNA pseudouridine synthase B; n=12;
Rickettsia|Rep: tRNA pseudouridine synthase B -
Rickettsia felis (Rickettsia azadi)
Length = 339
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 606 TVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGI 773
T+Y+ K L+FD+ ++ C G+YIRT+ L L L G +IELRR + GI
Sbjct: 146 TIYNLKCLNFDEKNATASYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGI 201
Score = 42.3 bits (95), Expect = 0.015
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 322 EVVSWIKRILKAE-KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
++VS +K+IL E K GH+GTLD + G L + + AT+L++ +A K Y+
Sbjct: 18 KLVSMVKKILGKEVKVGHAGTLDVEAEGILPLAVGEATKLIQLLIDAKKTYI 69
>UniRef50_Q46JB9 Cluster: tRNA pseudouridine synthase B; n=2;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus (strain NATL2A)
Length = 314
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+ V+ ++++ +K GHSGTLDP VTG L + I ATRL+ Q + K Y + L +
Sbjct: 20 DCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQGS-KAYRGIIQLGATT 78
Query: 502 ENIQKVTQGLGEAAWSSIPE 561
+ + AW I +
Sbjct: 79 NTDDMQGEIIESKAWPLITQ 98
Score = 39.1 bits (87), Expect = 0.14
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 606 TVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRS 767
T+ L+ + QDK + V C G+YIR++ +G +G GG + LRR ++
Sbjct: 147 TINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGDKIGCGGYLKSLRRTKA 200
>UniRef50_P59874 Cluster: tRNA pseudouridine synthase B; n=10;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Bordetella parapertussis
Length = 244
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV 480
KR + A K GH+GTLDP TG L+ C+ RAT++ A K Y A+
Sbjct: 31 KRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQAM 77
>UniRef50_A4S143 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 279
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 322 EVVSWIKRILK---AEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ ++R+ + +K GH GTLDP TG LI+C+ +AT+ V+ K Y L
Sbjct: 60 DVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEEYSGMDKTYTGTIKL 118
Score = 35.5 bits (78), Expect = 1.7
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Frame = +3
Query: 501 REYSKSHTGXWRSCVELYS----RGPRLISAVKRQLRVRTVY-DSKLLDFD-----QDKN 650
RE ++ TG + +YS G RL + + + V + D + +F+ +D
Sbjct: 146 REGARKLTGAIKQLPPMYSAIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQ 205
Query: 651 IGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXKEGMXTMHDILNA 821
I F G+Y+RT+ L LG G + LRR + G + E T+ + A
Sbjct: 206 IVHFSAHVSKGTYVRTLAYDLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEA 262
>UniRef50_P59880 Cluster: tRNA pseudouridine synthase B; n=2;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus
Length = 313
Score = 48.0 bits (109), Expect = 3e-04
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+ V+ ++RI ++ GH GTLDP VTG L + I +ATRL+ S + K Y L +
Sbjct: 21 DCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLL-SFLPSPKTYEGTIKLGIST 79
Query: 502 ENIQKVTQGLGEAAWSSIPE 561
+ + E +W + E
Sbjct: 80 NTDDLTGETISEHSWDQVKE 99
Score = 35.1 bits (77), Expect = 2.2
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 609 VYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
+Y KL+++++ V C G+YIR++ +G LG GG + +L R
Sbjct: 149 IYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGKKLGCGGALAKLNR 198
>UniRef50_Q820P2 Cluster: tRNA pseudouridine synthase B; n=3;
Nitrosomonadaceae|Rep: tRNA pseudouridine synthase B -
Nitrosomonas europaea
Length = 308
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
KR+L A K GH+GTLDP G L +C+ AT+ + K Y+A L
Sbjct: 18 KRLLSAAKAGHTGTLDPMAQGLLPICLGEATKFSSTLLGVDKTYIASLRL 67
>UniRef50_Q1IPJ6 Cluster: TRNA pseudouridine synthase B; n=1;
Acidobacteria bacterium Ellin345|Rep: TRNA pseudouridine
synthase B - Acidobacteria bacterium (strain Ellin345)
Length = 302
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV+ ++R+L GH GTLDP TG L V + R TRL + ++ K Y A
Sbjct: 19 DVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFYNHSEKSYEGEIRFGFAT 78
Query: 502 ENIQKVTQGLGEA 540
+ +GEA
Sbjct: 79 NTYDAEGETVGEA 91
>UniRef50_Q0AYI5 Cluster: Pseudouridylate synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridylate synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 299
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFW--VSCEAGSYIRTMCVHLGLMLGVGGQMIELR 755
V+R+ R +++ +LL+ D ++ + VSC G+YIRT+C +G LG G + LR
Sbjct: 137 VERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCHDIGQELGCGAYLSSLR 196
Query: 756 RVRSG 770
R RSG
Sbjct: 197 RSRSG 201
Score = 44.0 bits (99), Expect = 0.005
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 322 EVVSWIKRILKAE-KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+V+ +K++L + K GH GTLDP G L V + TR++ ++ KEY+A L
Sbjct: 17 DVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFVEDETKEYIATMTL 73
>UniRef50_A5CSY9 Cluster: TRNA pseudouridine synthase B; n=2;
Actinobacteria (class)|Rep: TRNA pseudouridine synthase
B - Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382)
Length = 319
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
++V+ +R+ K GH+GTLDP TG +I+ ++ +TRL+ KEY+A L A
Sbjct: 29 DLVARTRRLAGTRKVGHAGTLDPMATGLMILGVNSSTRLLTYLVGLDKEYLATIRLGRA 87
Score = 40.3 bits (90), Expect = 0.060
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
++C +G+Y+R + LG LGVGG + LRR R G
Sbjct: 190 ITCSSGTYVRALARDLGRALGVGGHLTALRRTRVG 224
>UniRef50_A4M809 Cluster: TRNA pseudouridine synthase B; n=1;
Petrotoga mobilis SJ95|Rep: TRNA pseudouridine synthase
B - Petrotoga mobilis SJ95
Length = 305
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/50 (40%), Positives = 35/50 (70%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+V++ +++ +K GH+GTLDP TG L+V +++AT+L++ QN K Y
Sbjct: 18 DVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQNEKKTY 67
Score = 39.1 bits (87), Expect = 0.14
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGV 731
Y+R ++I+ +++++ +L +F Q+ F+V +G+YIR++ + +G LG
Sbjct: 131 YAREGKIINLPPKKVKIY-----QLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYALGC 185
Query: 732 GGQMIELRRVRSG 770
G EL RV+SG
Sbjct: 186 GAVTKELCRVKSG 198
>UniRef50_Q31GK3 Cluster: tRNA pseudouridine synthase B; n=1;
Thiomicrospira crunogena XCL-2|Rep: tRNA pseudouridine
synthase B - Thiomicrospira crunogena (strain XCL-2)
Length = 303
Score = 47.6 bits (108), Expect = 4e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++R+ A+K GH+G LDP TG L +C+ AT++ ++ K Y+A L
Sbjct: 30 VRRVYNAKKAGHTGALDPFATGLLPICLGEATKISGLLLDSDKRYIATLQL 80
Score = 41.1 bits (92), Expect = 0.034
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R R +Y+ KL+DF+ + F V C G+Y+RT+ + LG G + L R
Sbjct: 145 IERAARPIHIYELKLIDFEN--TVVRFEVLCSKGTYVRTLGEDIAKALGTVGHLTGLHRT 202
Query: 762 RSGIQGXKEGMXTMHDI 812
++G E M T+ +I
Sbjct: 203 QTGALTGDE-MATLEEI 218
>UniRef50_Q6YQY6 Cluster: tRNA pseudouridine synthase B; n=4;
Candidatus Phytoplasma|Rep: tRNA pseudouridine synthase
B - Onion yellows phytoplasma
Length = 283
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVF 483
+VV IK+ +K GH+GTLDP +G LI+C+ +AT+L K Y F
Sbjct: 17 DVVFQIKKKFHFDKVGHTGTLDPLASGLLIICVGKATKLAFLFDKLPKTYQGTF 70
>UniRef50_Q1LSL0 Cluster: TRNA pseudouridine synthase B; n=1;
Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)|Rep: TRNA pseudouridine synthase B -
Baumannia cicadellinicola subsp. Homalodisca coagulata
Length = 317
Score = 47.2 bits (107), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
+KR+ + +K GH+G LDP +G L +C+ AT+ K +A K Y+
Sbjct: 33 VKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKYLLDADKRYI 78
Score = 38.3 bits (85), Expect = 0.24
Identities = 20/60 (33%), Positives = 37/60 (61%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
+ R R+ +Y+ ++LD+D + +I + + C G+YIRT+ +G +LG G + LRR+
Sbjct: 147 IPRSARLVHIYNLQILDWD-NTHIEL-QIHCSKGTYIRTIIDDIGELLGCGAHVTMLRRL 204
>UniRef50_Q1GXD4 Cluster: TRNA pseudouridine synthase B; n=1;
Methylobacillus flagellatus KT|Rep: TRNA pseudouridine
synthase B - Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875)
Length = 302
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHS 495
+ + +KR+ +A K GH+G+LDP +G L +C+ AT+ +A K Y A+ L S
Sbjct: 26 QALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATKFSHFLLDADKSYRALVTLGS 83
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
+ R+ R T++ L FD + V VSC G+YIRT+ +G LG G + LRR+
Sbjct: 145 IPRKPRPVTIHAIALERFDGKQFEMV--VSCSKGTYIRTLAEDIGSRLGCGAHLGGLRRL 202
>UniRef50_Q14NU4 Cluster: Putative trna pseudouridine synthase b
protein; n=1; Spiroplasma citri|Rep: Putative trna
pseudouridine synthase b protein - Spiroplasma citri
Length = 303
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+V+ IK+ L+ K GH+GTLDP TG L+V I+ AT++ + A K Y
Sbjct: 18 QVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLTADKAY 67
>UniRef50_A6DGZ3 Cluster: tRNA pseudouridine synthase B; n=1;
Lentisphaera araneosa HTCC2155|Rep: tRNA pseudouridine
synthase B - Lentisphaera araneosa HTCC2155
Length = 245
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV+ ++ + K GH GTLDP TG ++V I +AT+L + K Y+ L
Sbjct: 29 DVVNLVRNRYRFNKVGHCGTLDPLATGLIVVVIGKATKLASKLTSDDKTYITEMTLGRET 88
Query: 502 ENIQKVTQGLGEAAWSSIPE 561
+ + + EA++ + E
Sbjct: 89 ASHDEEGETTREASFDHVTE 108
Score = 35.9 bits (79), Expect = 1.3
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQ-DKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
V+R+ R T + LD D+ D F + C GSY+R +C +G L M LRR
Sbjct: 149 VEREARPVTFHS---LDIDKIDLPKVHFTLHCSKGSYVRVLCHDMGRKLETAAYMSNLRR 205
Query: 759 VRSG 770
+SG
Sbjct: 206 TQSG 209
>UniRef50_Q820Z5 Cluster: tRNA pseudouridine synthase B; n=2;
Tropheryma whipplei|Rep: tRNA pseudouridine synthase B -
Tropheryma whipplei (strain TW08/27) (Whipple's
bacillus)
Length = 383
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
V+ I+ + +K GH GTLDP G LI+ ATRL++ N K Y+A L
Sbjct: 34 VAKIRHLTGVKKIGHCGTLDPAACGLLIMGCGTATRLIRYMSNLDKRYIATITL 87
Score = 35.9 bits (79), Expect = 1.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
++C +G+Y+R + +G LGVGG + L+R+ G
Sbjct: 181 ITCSSGTYVRALARDMGKFLGVGGHLSYLKRLSIG 215
>UniRef50_Q8RA40 Cluster: tRNA pseudouridine synthase B; n=3;
Thermoanaerobacter|Rep: tRNA pseudouridine synthase B -
Thermoanaerobacter tengcongensis
Length = 285
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV +I++I +K GH+GTLDP G L VC+ RAT+ K Y
Sbjct: 19 DVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYLMEHDKRY 68
>UniRef50_Q39H28 Cluster: tRNA pseudouridine synthase B; n=55;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 322
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
KR+L A+K GH+GTLDP +G L +C AT+ + A K Y A L
Sbjct: 50 KRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLEADKTYEATMRL 99
Score = 34.7 bits (76), Expect = 3.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V+C G+Y+RT+ +G LG G + LRR G
Sbjct: 187 FRVTCSKGTYVRTLAEDIGEALGCGAHLTMLRRTGVG 223
>UniRef50_A3WPV5 Cluster: TRNA pseudouridine 5S synthase; n=1;
Idiomarina baltica OS145|Rep: TRNA pseudouridine 5S
synthase - Idiomarina baltica OS145
Length = 319
Score = 46.8 bits (106), Expect = 7e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+KR+ +A+K GH+G LDP TG L VC+ AT+ + +A K Y
Sbjct: 33 VKRLYEAQKVGHTGALDPLATGLLPVCLGEATKFSQYLLDADKAY 77
Score = 36.7 bits (81), Expect = 0.74
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
V R+ R +V +LL D D V+C G+YIRT+ +G LG G + ELRR
Sbjct: 147 VPRKTRTISVRAIELLHRDGD--FVTLQVACSKGTYIRTLVDDMGQALGCGAHVRELRR 203
>UniRef50_Q72GS9 Cluster: tRNA pseudouridine synthase B; n=2;
Thermus thermophilus|Rep: tRNA pseudouridine synthase B
- Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM
7039)
Length = 312
Score = 46.8 bits (106), Expect = 7e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+VV +R L + GH+GTLDP TG L++ + +T+LV KEY+A
Sbjct: 16 DVVEEARRRLSTRRVGHTGTLDPLATGLLLLVTNESTKLVPFLSGEDKEYIA 67
>UniRef50_Q9RB36 Cluster: tRNA pseudouridine synthase B; n=4;
Bacteroidetes/Chlorobi group|Rep: tRNA pseudouridine
synthase B - Cytophaga johnsonae (Flavobacterium
johnsoniae)
Length = 229
Score = 46.8 bits (106), Expect = 7e-04
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 352 KAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQ 525
K K GH+GTLDP TG L++C + T+ + Q KEY F + + + T+
Sbjct: 41 KKFKIGHAGTLDPLATGLLLICTGKFTKKISELQGQAKEYTGTFYIGATTPSYDLETE 98
>UniRef50_Q1AW51 Cluster: TRNA pseudouridine synthase B; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: TRNA
pseudouridine synthase B - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 265
Score = 46.4 bits (105), Expect = 0.001
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 337 IKRIL-KAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENI 510
+KR+L + K GH+GTLDP +G L++ + RATRL + K YVA +A + +
Sbjct: 1 MKRLLPRRTKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTL 59
Score = 46.0 bits (104), Expect = 0.001
Identities = 29/79 (36%), Positives = 40/79 (50%)
Frame = +3
Query: 534 RSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHL 713
R EL+ RG V+R+ R+ V+ +LL FD F VSC +G+Y+RT+ L
Sbjct: 104 RRLYELHRRGVE----VEREPRLVRVHSLELLSFDPPA--ATFAVSCSSGTYVRTLISDL 157
Query: 714 GLMLGVGGQMIELRRVRSG 770
LG + LRR R G
Sbjct: 158 AASLGTAAYLTALRRTRVG 176
>UniRef50_A6EIQ4 Cluster: Putative tRNA pseudouridine synthase; n=1;
Pedobacter sp. BAL39|Rep: Putative tRNA pseudouridine
synthase - Pedobacter sp. BAL39
Length = 258
Score = 46.4 bits (105), Expect = 0.001
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 322 EVVSWIKRILKAEK--TGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHS 495
+VV I+ LK K GH+GTLDP TG LI+C + T+ + S Q KEY L +
Sbjct: 47 DVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDSFQAEEKEYTGTMVLGA 106
Query: 496 AVENIQKVT 522
+ T
Sbjct: 107 TTPSFDMET 115
>UniRef50_A5UZQ6 Cluster: tRNA pseudouridine synthase B; n=4;
Chloroflexaceae|Rep: tRNA pseudouridine synthase B -
Roseiflexus sp. RS-1
Length = 300
Score = 46.4 bits (105), Expect = 0.001
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVK-SQQNAGKEYVA 477
+VV+ I+R+ + GH+GTLDP TG L+V + ATRL++ Q K+Y A
Sbjct: 17 DVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQHQTLKQYRA 69
>UniRef50_A1HSB7 Cluster: TRNA pseudouridine synthase B; n=1;
Thermosinus carboxydivorans Nor1|Rep: TRNA pseudouridine
synthase B - Thermosinus carboxydivorans Nor1
Length = 292
Score = 46.4 bits (105), Expect = 0.001
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+ V++++R+ ++ GH+GTLDP G L V + ATRL++ +A K Y
Sbjct: 18 DAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADADKSY 67
Score = 35.1 bits (77), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V C G+YIRT+C +G LG M L R R G
Sbjct: 162 FDVDCSKGTYIRTLCTDIGRRLGCPAVMSFLVRTRVG 198
>UniRef50_A0UY57 Cluster: TRNA pseudouridine synthase B; n=2;
Clostridium|Rep: TRNA pseudouridine synthase B -
Clostridium cellulolyticum H10
Length = 309
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+V+ +++++ +K GH+GTLDP G L +CI AT+ ++ N K Y A L
Sbjct: 17 DVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMINKDKVYRAELTL 72
Score = 39.5 bits (88), Expect = 0.10
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+ C G+YIRT+C +G LG GG M L R R+G
Sbjct: 178 IHCSKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAG 212
>UniRef50_Q8ZBC4 Cluster: tRNA pseudouridine synthase B; n=129;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Yersinia pestis
Length = 324
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+V+ +KR+ A + GH+G LDP TG L +C+ AT+ + ++ K Y V L
Sbjct: 27 DVLQKVKRLFSANRAGHTGALDPLATGMLPICLGEATKFSQFLLDSDKRYRVVARL 82
Score = 37.1 bits (82), Expect = 0.56
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R+ R TVY+ LL + N + C G+YIRT+ LG +LG G + LRR+
Sbjct: 146 VEREARSITVYE--LLFIRWEGNDLELEIHCSKGTYIRTIIDDLGELLGCGAHVSYLRRL 203
Query: 762 R 764
+
Sbjct: 204 Q 204
>UniRef50_Q5LLT4 Cluster: tRNA pseudouridine synthase B; n=26;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Silicibacter pomeroyi
Length = 303
Score = 46.4 bits (105), Expect = 0.001
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
VV+ ++ L A K GH+GTLDP+ TG L + + AT+ V +A K YV L A
Sbjct: 27 VVNKVRWALGANKAGHAGTLDPEATGVLAIALGEATKTVPYITDALKAYVFTVRLGQA 84
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 591 QLRVRTVYDSKLLDFDQ-DKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRS 767
+L R ++ +LL D+ D + + ++C G Y+R++ LG LG G + ELRR+ S
Sbjct: 146 ELAARPLWVEELLMLDRPDPDHVLLEMTCGKGGYVRSIARDLGAALGCYGHVRELRRIWS 205
Query: 768 GIQGXKEGM 794
G ++G+
Sbjct: 206 GPFEAEDGI 214
>UniRef50_Q8WWH5 Cluster: Probable tRNA pseudouridine synthase 1;
n=24; Euteleostomi|Rep: Probable tRNA pseudouridine
synthase 1 - Homo sapiens (Human)
Length = 349
Score = 46.4 bits (105), Expect = 0.001
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 334 WIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQ 513
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A + +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 514 KVTQGLGEAAWSSIPE 561
+ E + I +
Sbjct: 164 STGRVTEEKPYDKITQ 179
>UniRef50_A4GHL8 Cluster: TRNA pseudouridine synthase B; n=3;
Bacteria|Rep: TRNA pseudouridine synthase B - uncultured
marine bacterium EB0_35D03
Length = 303
Score = 46.0 bits (104), Expect = 0.001
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
V+ +KR+ A K GH+G+LDP +G L +C+ +AT++ + + K+Y
Sbjct: 28 VLQEVKRLFDANKAGHTGSLDPLASGLLPICLGQATKVAQFLLDGDKQY 76
Score = 41.9 bits (94), Expect = 0.020
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
V R R +YD +D+ D I VSC G+YIRT+ +G LG ++ELRR
Sbjct: 147 VDRAARPVKIYDISFIDYADD--IMTISVSCSKGTYIRTLVEDIGENLGSSAYVVELRR 203
>UniRef50_A4E6U4 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 300
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+VVS +R L + GH+GTLDP +G ++V + +ATRL+ K YVA
Sbjct: 15 DVVSQCRRALHERRVGHAGTLDPMASGVMVVGVGQATRLLGMLTLDTKSYVA 66
>UniRef50_A1U5Z8 Cluster: TRNA pseudouridine synthase B; n=4;
Gammaproteobacteria|Rep: TRNA pseudouridine synthase B -
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 307
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++ +KR+ A K GH+G LDP TG L +C AT+ ++ ++ K Y+ L
Sbjct: 27 ILQQVKRLYGAAKAGHTGALDPLATGVLPLCFGEATKFSQTMLDSDKAYITTARL 81
Score = 37.5 bits (83), Expect = 0.42
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDF-DQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
++R R T+Y+ KLL +Q+ ++ V +C G+YIR++ +G +LG G + LRR
Sbjct: 146 IERPARPVTIYELKLLAVREQELDLAV---TCTKGTYIRSLVEDIGEVLGCGAHVSALRR 202
>UniRef50_A1A0A4 Cluster: TRNA pseudouridine synthase B; n=2;
Bifidobacterium adolescentis|Rep: TRNA pseudouridine
synthase B - Bifidobacterium adolescentis (strain ATCC
15703 / DSM 20083)
Length = 356
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ ++ L ++ GH+GTLDP TG L+V ATRL+ + K Y+A L
Sbjct: 23 DVVAAVRGALHMKRVGHAGTLDPMATGVLVVGFGNATRLLNYIVDHDKTYLATIRL 78
Score = 40.7 bits (91), Expect = 0.045
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V+C AG+YIR + LG LG+GG + LRR+R G
Sbjct: 211 VTCSAGTYIRALGRDLGAELGLGGHLTMLRRIRVG 245
>UniRef50_Q319E0 Cluster: tRNA pseudouridine synthase B; n=6;
Prochlorococcus marinus|Rep: tRNA pseudouridine synthase
B - Prochlorococcus marinus (strain MIT 9312)
Length = 307
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+ V I+++L K GH+GTLDP+V G L + I ATR ++ GK Y+ L
Sbjct: 20 DCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQYLPQ-GKTYIGQIKL 74
Score = 35.1 bits (77), Expect = 2.2
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 624 LLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
L+ +DQ I ++C AG+YIR + LG +L G +++L+R+
Sbjct: 153 LMKWDQINGIIELKINCSAGTYIRAIARDLGEILNSEGCLLQLKRI 198
>UniRef50_Q7MBB8 Cluster: tRNA pseudouridine synthase B; n=5;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Gloeobacter violaceus
Length = 292
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV--FNLHS 495
+ ++ ++R+L + GH GTLDP TG L V + RATRL++ + GK Y A F L +
Sbjct: 17 DCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRF-LSEGKVYRATVRFGLST 75
Query: 496 AVENIQ 513
++++
Sbjct: 76 DTDDLE 81
Score = 36.3 bits (80), Expect = 0.97
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
++C G+YIR++ LG LG G + L R RSG
Sbjct: 166 IACSTGTYIRSIARDLGTALGTGATLARLLRTRSG 200
>UniRef50_P60344 Cluster: tRNA pseudouridine synthase B; n=5;
Geobacter|Rep: tRNA pseudouridine synthase B - Geobacter
sulfurreducens
Length = 304
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV+ +++ L+ +K GH+GTLDP TG L V + T+ + + K Y A L +A
Sbjct: 17 DVVARVRQTLRQKKAGHTGTLDPFATGVLPVAVGEGTKAIPYLDESTKVYRATLILGAAT 76
Query: 502 ENIQKVTQGLGEAAW 546
+ Q + W
Sbjct: 77 DTQDHTGQVVHAGDW 91
Score = 41.9 bits (94), Expect = 0.020
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +3
Query: 534 RSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHL 713
R V LY R V+R+ R V+ S ++D D + F +SC G+Y+RT+ +
Sbjct: 122 RDGVPLYKLA-RTGREVERERREIEVF-SLVVD-SIDLPLVTFTLSCSRGTYVRTLAHDM 178
Query: 714 GLMLGVGGQMIELRRVRSG 770
G LG G + ELRR+ SG
Sbjct: 179 GERLGCGAHLTELRRLSSG 197
>UniRef50_Q2BH44 Cluster: TRNA pseudouridine synthase B; n=1;
Neptuniibacter caesariensis|Rep: TRNA pseudouridine
synthase B - Neptuniibacter caesariensis
Length = 307
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++RI A K GH+G LDP TG L +C+ AT+ + ++ K Y+ L
Sbjct: 16 VRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRYITTAKL 66
>UniRef50_Q1MZS4 Cluster: TRNA pseudouridine synthase B; n=1;
Oceanobacter sp. RED65|Rep: TRNA pseudouridine synthase
B - Oceanobacter sp. RED65
Length = 327
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
V+ +KR+ A K GH+G LDP TG L +C+ AT+ + + K Y+ L
Sbjct: 27 VLQQVKRLYGAAKAGHTGALDPIATGVLPICLGEATKFSQRLLESDKRYITKVQL 81
>UniRef50_A6GNL1 Cluster: tRNA pseudouridine synthase B; n=1;
Limnobacter sp. MED105|Rep: tRNA pseudouridine synthase
B - Limnobacter sp. MED105
Length = 344
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+KR+ +AEKTGH+GTLDP +G L + AT+ +A K Y
Sbjct: 37 VKRLYRAEKTGHTGTLDPLASGLLPLMFGEATKFAADLIDASKTY 81
Score = 33.5 bits (73), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V+C G+Y+RT+ + LG G + ELRR G
Sbjct: 188 VNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIG 222
>UniRef50_Q9WZW0 Cluster: tRNA pseudouridine synthase B; n=6;
Thermotogaceae|Rep: tRNA pseudouridine synthase B -
Thermotoga maritima
Length = 309
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
P +VV +++ LK K GH GTLDP G LI+ +++ TR+++ ++ K Y
Sbjct: 14 PTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVY 67
Score = 35.5 bits (78), Expect = 1.7
Identities = 19/80 (23%), Positives = 43/80 (53%)
Frame = +3
Query: 555 SRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVG 734
+R ++I+ +++++ ++D + + +++ F V G+YIR++C+ +G LG G
Sbjct: 131 AREGKIINLPPKRVKIFKIWDVNI----EGRDVS-FRVEVSPGTYIRSLCMDIGYKLGCG 185
Query: 735 GQMIELRRVRSGIQGXKEGM 794
+EL R G +E +
Sbjct: 186 ATAVELVRESVGPHTIEESL 205
>UniRef50_Q6F7I5 Cluster: tRNA pseudouridine synthase B; n=6;
Proteobacteria|Rep: tRNA pseudouridine synthase B -
Acinetobacter sp. (strain ADP1)
Length = 318
Score = 45.6 bits (103), Expect = 0.002
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R+ R T++ KL+DFD + V+C G+YIR + +G LG GG + L RV
Sbjct: 166 IEREARPVTIHALKLVDFDTESL--TLDVTCSKGTYIRVLGEDIGEALGCGGHLTALHRV 223
Query: 762 RSG 770
++G
Sbjct: 224 QTG 226
Score = 43.6 bits (98), Expect = 0.006
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
V+ ++ + +A+K GH+G LDP TG L +C+ AT+ ++ K Y V L
Sbjct: 47 VLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKRYQTVVKL 101
>UniRef50_UPI0000E87C37 Cluster: tRNA pseudouridine synthase B; n=1;
Methylophilales bacterium HTCC2181|Rep: tRNA
pseudouridine synthase B - Methylophilales bacterium
HTCC2181
Length = 300
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+ +S IK I +K GH+GTLDP TG L +C+ AT+ + K Y A L
Sbjct: 26 QALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEATKFSSFLLESDKTYEASIKL 81
Score = 39.9 bits (89), Expect = 0.079
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R+ R + L+D+ N+ V C G+YIRT+ +G L GG +I LRR
Sbjct: 146 IERKKRSINIVSLDLIDYSD--NVLKITVECSKGTYIRTLASDIGDKLNTGGYLIALRRT 203
Query: 762 RSG 770
G
Sbjct: 204 AIG 206
>UniRef50_A6Q784 Cluster: tRNA pseudouridine synthase B; n=3;
Epsilonproteobacteria|Rep: tRNA pseudouridine synthase B
- Sulfurovum sp. (strain NBC37-1)
Length = 277
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL--HSAV 501
+ ++KR +K G SGTLDP TGCLIV + T+L + K Y A L +S
Sbjct: 19 MGYVKRKYNTKKVGFSGTLDPFATGCLIVATGQYTKLFQYLNKTPKSYKATLWLGANSPS 78
Query: 502 ENIQKV 519
+I+KV
Sbjct: 79 LDIEKV 84
>UniRef50_Q6F1I4 Cluster: tRNA pseudouridine synthase B; n=3;
Mollicutes|Rep: tRNA pseudouridine synthase B -
Mesoplasma florum (Acholeplasma florum)
Length = 286
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVE 504
++ +KR L +K GH+GTLDP TG +I I+ T+L N K Y L A +
Sbjct: 20 LIQKLKRKLNVKKIGHAGTLDPLATGVVICLINNGTKLSDYFLNENKAYEVTMKLFQATD 79
>UniRef50_Q5ZRV6 Cluster: tRNA pseudouridine synthase B; n=5;
Legionella pneumophila|Rep: tRNA pseudouridine synthase
B - Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 303
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
K + A+K GH+G+LDP TG L +C AT++ + NA K Y + L
Sbjct: 32 KHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYLLNADKSYETIGRL 81
>UniRef50_Q8CY45 Cluster: tRNA pseudouridine synthase B; n=2;
Bifidobacterium longum|Rep: tRNA pseudouridine synthase
B - Bifidobacterium longum
Length = 387
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+ V+ ++ L +K GH+GTLDP TG L++ ATRL+ + K Y A L
Sbjct: 22 DAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVAHDKTYEATIRL 77
Score = 41.5 bits (93), Expect = 0.026
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+SC +G+YIR + LG LGVGG + LRR R G
Sbjct: 216 ISCSSGTYIRALARDLGKELGVGGYLTRLRRTRVG 250
>UniRef50_A6PMJ9 Cluster: tRNA pseudouridine synthase B; n=1;
Victivallis vadensis ATCC BAA-548|Rep: tRNA
pseudouridine synthase B - Victivallis vadensis ATCC
BAA-548
Length = 254
Score = 44.8 bits (101), Expect = 0.003
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+VV++++ K GH GTLDP TG L++ + + T+L K Y A L
Sbjct: 31 DVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLSSKFSGEDKIYEATLQLGLET 90
Query: 502 ENIQKVTQGLGEAAWSSIPE 561
++ E WS + E
Sbjct: 91 DSCDLDGTVTAEHDWSGVTE 110
Score = 43.6 bits (98), Expect = 0.006
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F + C G+Y+RT+C G LG GG + LRR RSG
Sbjct: 175 FTLHCSKGTYVRTLCSDAGKKLGCGGTLAALRRTRSG 211
>UniRef50_A3VQI2 Cluster: TRNA pseudouridine synthase B; n=1;
Parvularcula bermudensis HTCC2503|Rep: TRNA
pseudouridine synthase B - Parvularcula bermudensis
HTCC2503
Length = 320
Score = 44.8 bits (101), Expect = 0.003
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
E VS ++ + A+K GH+GTLDP TG L V AT+ V Q+ K Y
Sbjct: 26 EAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFGEATKTVPYIQDGKKTY 75
>UniRef50_P59881 Cluster: tRNA pseudouridine synthase B; n=12;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Prochlorococcus marinus (strain MIT 9313)
Length = 320
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 501
+ VS ++R+ ++ GH GTLDP VTG L + + ATRL+ A K Y L
Sbjct: 20 DCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA-KSYRGSIQLGQRT 78
Query: 502 ENIQKVTQGLGEAAWSSIPEA 564
+ + + + AW + A
Sbjct: 79 SSDDQQGDLISKQAWPELNTA 99
Score = 33.1 bits (72), Expect = 9.1
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3
Query: 597 RVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRS 767
R T+ +LL+++Q F V C +G+YIR++ LG ++G G + L+R ++
Sbjct: 144 RTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDLGELIGCGACLGWLKRTQA 200
>UniRef50_P59877 Cluster: tRNA pseudouridine synthase B; n=2;
Candidatus Blochmannia|Rep: tRNA pseudouridine synthase
B - Blochmannia floridanus
Length = 255
Score = 44.8 bits (101), Expect = 0.003
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVE 504
IK++ A+K G+ GTLDP TG L +C +AT+ N+ K Y + L + +
Sbjct: 36 IKKLFYAKKVGYIGTLDPIATGMLPICFGKATKFASYLLNSDKRYRVLVKLGESTD 91
Score = 35.9 bits (79), Expect = 1.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 603 RTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
RT++ L +Q +I + C G+Y+R++ +G LG G +I LRR+ G
Sbjct: 155 RTIHVYSLYCLNQLNSIIELEIHCSKGTYVRSIVNDIGEYLGCGAHIISLRRLMVG 210
>UniRef50_Q2J732 Cluster: TRNA pseudouridine synthase B; n=5;
Actinomycetales|Rep: TRNA pseudouridine synthase B -
Frankia sp. (strain CcI3)
Length = 327
Score = 44.4 bits (100), Expect = 0.004
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+VV+ +RIL + GH+GTLDP TG L++ R TRL+ K Y A L
Sbjct: 49 DVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLALTDKVYDATIRL 104
>UniRef50_Q6G5F5 Cluster: tRNA pseudouridine synthase B; n=2;
Bartonella|Rep: tRNA pseudouridine synthase B -
Bartonella henselae (Rochalimaea henselae)
Length = 319
Score = 44.4 bits (100), Expect = 0.004
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
E VS IK + A+K GH+GTLDP +G L + + AT+ V K Y
Sbjct: 28 EAVSQIKYLFHAQKVGHAGTLDPLASGLLPIALGEATKTVPYVMQGTKTY 77
>UniRef50_Q8YWR1 Cluster: tRNA pseudouridine synthase B; n=8;
Cyanobacteria|Rep: tRNA pseudouridine synthase B -
Anabaena sp. (strain PCC 7120)
Length = 293
Score = 44.4 bits (100), Expect = 0.004
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV--FNLHS 495
+ V+ ++++L+ ++ GH+GTLDP TG L + + +ATRL++ + K Y A F + +
Sbjct: 17 DCVARLRKMLRLKRVGHAGTLDPAATGVLPIAVGKATRLLQ-YLPSDKAYKATVRFGVQT 75
Query: 496 AVENIQ 513
+++Q
Sbjct: 76 TTDDLQ 81
>UniRef50_Q0LD35 Cluster: TRNA pseudouridine synthase B; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: TRNA
pseudouridine synthase B - Herpetosiphon aurantiacus
ATCC 23779
Length = 291
Score = 44.0 bits (99), Expect = 0.005
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +1
Query: 283 LHQRRQTEQPQ---LPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVK-SQ 450
LH ++PQ +VV +KR + ++ GH GTLDP TG L + + ATRL++
Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61
Query: 451 QNAGKEYVAVFNL 489
+ K Y A L
Sbjct: 62 EEERKAYTATLRL 74
Score = 37.1 bits (82), Expect = 0.56
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C G+YIR + +G +LG G + LRR R+G
Sbjct: 165 VDCSKGTYIRAIARDIGALLGCGAHLTALRRTRAG 199
>UniRef50_A4BAM7 Cluster: TRNA pseudouridine synthase B; n=1;
Reinekea sp. MED297|Rep: TRNA pseudouridine synthase B -
Reinekea sp. MED297
Length = 305
Score = 44.0 bits (99), Expect = 0.005
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
++ + +A+K GH+G LDP TG L +C+ AT+ + +A K Y
Sbjct: 31 VRWLFQAQKAGHTGALDPAATGLLPICLGEATKFTQFLLDADKRY 75
Score = 33.1 bits (72), Expect = 9.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C G+YIRT+ +G G G + LRR++ G
Sbjct: 173 VHCSKGTYIRTLVADVGTHFGCGAHVKTLRRLQHG 207
>UniRef50_Q3J9B8 Cluster: tRNA pseudouridine synthase B; n=3;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 308
Score = 44.0 bits (99), Expect = 0.005
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+K+I +A K GH+G+LDP G L +C+ AT+L A K Y + L
Sbjct: 33 VKQIYQARKAGHTGSLDPLANGLLPICLGEATKLSGFLLEADKRYQVMCRL 83
Score = 42.7 bits (96), Expect = 0.011
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R+ R T++ KL + ++ +G F V C G+YIRT+ +G LG G +I LRR
Sbjct: 148 VERKSRQVTIHTIKLTELVNNE-LG-FEVFCSKGTYIRTLAEDIGRALGCGAHVIALRRT 205
Query: 762 RSGIQGXKE 788
+ G G +
Sbjct: 206 QVGSFGASD 214
>UniRef50_UPI0000E46C2D Cluster: PREDICTED: similar to TruB
pseudouridine (psi) synthase homolog 1 (E. coli); n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
TruB pseudouridine (psi) synthase homolog 1 (E. coli) -
Strongylocentrotus purpuratus
Length = 280
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENI 510
+R +K K GH GTLD TG L++ R T+L+ S GK Y A L A + +
Sbjct: 71 QRWIKLPKMGHGGTLDMNATGVLVIGCGRGTKLLSSYLQGGKVYRAQGRLGRATDTM 127
>UniRef50_A3ER78 Cluster: Putative pseudouridine synthase; n=1;
Leptospirillum sp. Group II UBA|Rep: Putative
pseudouridine synthase - Leptospirillum sp. Group II UBA
Length = 325
Score = 43.6 bits (98), Expect = 0.006
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
++R+ R VY ++L D F V C G+++RT+ +G +G+GG ++ LRR
Sbjct: 149 IEREARRIEVYSLEMLTVFPDGKTASFRVKCSKGTFVRTIAEEIGEAMGLGGHVVFLRRE 208
Query: 762 RSG 770
G
Sbjct: 209 EFG 211
Score = 39.5 bits (88), Expect = 0.10
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV +++ L + GH GTLDP TG L V + ++TRL + K Y
Sbjct: 29 DVVDSVRKNLGFIRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHGYDKTY 78
>UniRef50_P59884 Cluster: tRNA pseudouridine synthase B; n=1;
Synechococcus sp. WH 8102|Rep: tRNA pseudouridine
synthase B - Synechococcus sp. (strain WH8102)
Length = 291
Score = 43.6 bits (98), Expect = 0.006
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVEN 507
VS ++R ++ GH GTLDP VTG L + + ATRL+ K Y V L S +
Sbjct: 22 VSRLRRCYGLKRVGHGGTLDPAVTGVLPIALGPATRLL-PYLPGDKTYRGVIQLGSITSS 80
Query: 508 IQKVTQGLGEAAWSSI-PE 561
+ L +A W + PE
Sbjct: 81 DDLEGELLRQAPWPDLQPE 99
Score = 41.9 bits (94), Expect = 0.020
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 606 TVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRS 767
T++ +LL +D ++ V C AG+YIR++ LG LG GG + +LRR ++
Sbjct: 147 TIHRLQLLHWDPNQGQLTLEVHCSAGTYIRSLARDLGEQLGCGGCLAQLRRTQA 200
>UniRef50_Q8GB99 Cluster: tRNA pseudouridine synthase B; n=1;
Heliobacillus mobilis|Rep: tRNA pseudouridine synthase B
- Heliobacillus mobilis
Length = 307
Score = 43.6 bits (98), Expect = 0.006
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVK 444
+VV+ +RIL+ ++ GH GTLDP G L + + +ATRL++
Sbjct: 24 DVVAKARRILREKRIGHMGTLDPDAAGVLPIALGQATRLIE 64
Score = 36.7 bits (81), Expect = 0.74
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V C G+YIRT+C +G LG G M L R RSG
Sbjct: 172 VDCSGGTYIRTLCHDIGQRLGCGAIMGWLIRRRSG 206
>UniRef50_A4XL67 Cluster: TRNA pseudouridine synthase B; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep: TRNA
pseudouridine synthase B - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 287
Score = 43.2 bits (97), Expect = 0.008
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+VV +++++ K K GH GTLDP +G L++ I AT+L K Y+A
Sbjct: 17 DVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFTQTKKTYIA 67
>UniRef50_Q6KHH8 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma mobile|Rep: tRNA pseudouridine synthase B -
Mycoplasma mobile
Length = 287
Score = 43.2 bits (97), Expect = 0.008
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +1
Query: 295 RQTEQPQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
R+T+ ++ K+ +K GH GTLDP TG LIV D T+L+ K YV
Sbjct: 8 RKTKNISSFNFINNFKKTKGFKKIGHCGTLDPLATGLLIVATDEDTKLIDYLDQKDKTYV 67
Query: 475 A 477
A
Sbjct: 68 A 68
Score = 33.9 bits (74), Expect = 5.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 621 KLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
KLL +++D+N F V G+YIR++ +G+ L M L R + G
Sbjct: 150 KLLSYNEDENYFDFEVVVSRGTYIRSLIYDIGIKLNSLAYMESLERTKIG 199
>UniRef50_O84096 Cluster: tRNA pseudouridine synthase B; n=9;
Chlamydiales|Rep: tRNA pseudouridine synthase B -
Chlamydia trachomatis
Length = 241
Score = 43.2 bits (97), Expect = 0.008
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 660 FWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
F V C G+YIR++ LG MLG G + ELRR+RSG
Sbjct: 167 FVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSG 203
Score = 41.9 bits (94), Expect = 0.020
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 RILKAEKTGHSGTLDPKVTGCLIVCIDRA-TRLVKSQQNAGKEYVAVFNLHSAVE 504
R++ +K GH+GTLDP TG +++ I R TRL KEY AV +L + +
Sbjct: 31 RLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIMLFEDKEYAAVAHLGTTTD 85
>UniRef50_Q8K9H3 Cluster: tRNA pseudouridine synthase B; n=2;
Buchnera aphidicola|Rep: tRNA pseudouridine synthase B -
Buchnera aphidicola subsp. Schizaphis graminum
Length = 312
Score = 43.2 bits (97), Expect = 0.008
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
V+ +K I KA+K G+ GTLDP TG L +C AT+ + K Y + L
Sbjct: 26 VLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFSNYLNASDKHYNVIARL 80
Score = 41.1 bits (92), Expect = 0.034
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
VKR +R +Y L+D Q N V C G+YIRT+ LG L G +I LRR+
Sbjct: 144 VKRNIRCVFIYKIDLVD--QKDNWIELNVHCSKGTYIRTLIEDLGEKLFCGAHVIRLRRL 201
Query: 762 RSGI 773
+ G+
Sbjct: 202 KIGL 205
>UniRef50_Q2GEU5 Cluster: TRNA pseudouridine synthase B; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: TRNA
pseudouridine synthase B - Neorickettsia sennetsu
(strain Miyayama)
Length = 235
Score = 42.7 bits (96), Expect = 0.011
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+KR +K G+ GTLDP TG L++ + R T+L+ ++ KEY
Sbjct: 31 LKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQFDDSFKEY 75
>UniRef50_Q9PGR1 Cluster: tRNA pseudouridine synthase B; n=12;
Xanthomonadaceae|Rep: tRNA pseudouridine synthase B -
Xylella fastidiosa
Length = 302
Score = 42.7 bits (96), Expect = 0.011
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+R+L+A+K GH+G+LDP TG L +C AT++ + K Y A
Sbjct: 33 RRLLRAKKGGHTGSLDPLATGLLPLCFGEATKIAGLLLGSTKAYDA 78
>UniRef50_Q057K1 Cluster: TRNA pseudouridine 55 synthetase; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: TRNA
pseudouridine 55 synthetase - Buchnera aphidicola subsp.
Cinara cedri
Length = 311
Score = 42.3 bits (95), Expect = 0.015
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++ IK+I A+K G++G+LDP TG L + AT+ K ++ K+Y + L
Sbjct: 26 ILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKFSKYLTDSAKKYHVIAKL 80
>UniRef50_Q3KI82 Cluster: tRNA pseudouridine synthase B; n=9;
Gammaproteobacteria|Rep: tRNA pseudouridine synthase B -
Pseudomonas fluorescens (strain PfO-1)
Length = 305
Score = 42.3 bits (95), Expect = 0.015
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++ +L AEK GH+G+LDP TG L +C AT+ + ++ K Y + L
Sbjct: 32 VRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDSDKGYETLAQL 82
Score = 41.9 bits (94), Expect = 0.020
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 582 VKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRV 761
V+R+ R T+ +LL F+ D V C G+YIRT+ +G LG G + ELRR
Sbjct: 146 VEREPRSVTIARLELLAFEGDT--ARLAVDCSKGTYIRTLVEDIGEQLGCGAYVAELRRT 203
Query: 762 RSG 770
++G
Sbjct: 204 QAG 206
>UniRef50_Q9SMH4 Cluster: Trans-splicing factor Raa2, chloroplast
precursor; n=1; Chlamydomonas reinhardtii|Rep:
Trans-splicing factor Raa2, chloroplast precursor -
Chlamydomonas reinhardtii
Length = 410
Score = 42.3 bits (95), Expect = 0.015
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 313 QLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
++PEVV+ ++R A+K LD + +G +++C ATRL + A K Y L
Sbjct: 147 EVPEVVAAVQRATGADKVASVAPLDARASGLMLLCFGSATRLAPRVERAAKRYTGTLVL 205
>UniRef50_A5IY15 Cluster: TRNA pseudouridine synthase B; n=1;
Mycoplasma agalactiae|Rep: TRNA pseudouridine synthase B
- Mycoplasma agalactiae
Length = 288
Score = 41.9 bits (94), Expect = 0.020
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 609 VYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
V+DSK+L F+ + V +++ G+YIR++ LG+ L M EL RV+ G
Sbjct: 143 VFDSKVLSFNSELQQAVVYMNVSKGAYIRSLVNDLGIFLNTYAYMSELDRVKVG 196
Score = 40.7 bits (91), Expect = 0.045
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 352 KAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
K +K GH+GTLDP +G L+V D T+L+ ++ K Y+
Sbjct: 25 KIKKIGHTGTLDPLASGLLLVATDEDTKLIPYIKHNNKAYI 65
>UniRef50_P60345 Cluster: tRNA pseudouridine synthase B; n=37;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Rhodopseudomonas palustris
Length = 366
Score = 41.9 bits (94), Expect = 0.020
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+ V+ +KR+ A++ GH+GTLDP +G L + + AT+ V + K Y
Sbjct: 71 QAVAVLKRLFSAKRAGHAGTLDPLASGGLPIAMGEATKTVPFVMDGRKRY 120
>UniRef50_Q8KFS9 Cluster: tRNA pseudouridine synthase B; n=10;
Chlorobiaceae|Rep: tRNA pseudouridine synthase B -
Chlorobium tepidum
Length = 240
Score = 41.9 bits (94), Expect = 0.020
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
KR K GH GTLDPK TG LI+ R T+ + S + K Y L
Sbjct: 39 KRNGAKRKVGHCGTLDPKATGLLILATGRKTKTISSLELLDKAYEGTIRL 88
Score = 37.9 bits (84), Expect = 0.32
Identities = 23/91 (25%), Positives = 41/91 (45%)
Frame = +3
Query: 498 RREYSKSHTGXWRSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCE 677
R + H+ W + LY + +R+ R ++ ++ + F++
Sbjct: 126 RMQQPPMHSAVWHNGKRLYELARQGHEVKERKARQIEIHQFEITGIELP--YVHFYIRVS 183
Query: 678 AGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
G+YIR + LG +LGVGG + L+RV G
Sbjct: 184 KGAYIRVIAHELGELLGVGGYLKSLKRVAIG 214
>UniRef50_Q4A5J8 Cluster: TRNA pseudouridine synthase B; n=1;
Mycoplasma synoviae 53|Rep: TRNA pseudouridine synthase
B - Mycoplasma synoviae (strain 53)
Length = 287
Score = 41.5 bits (93), Expect = 0.026
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 331 SWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA--VFNLHS 495
SW K AEK G SGTLDP +G +I+ + T++++ +N K Y+A FNL S
Sbjct: 19 SWAKEN-NAEKIGQSGTLDPLASGLVIMATNSDTKILQYVKNQPKVYLAKMEFNLFS 74
Score = 33.5 bits (73), Expect = 6.9
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 579 AVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
A+K + + ++ +LL+F+ +K VF VS +G+YIR++ L + L+R
Sbjct: 133 AIKLKKQKIKIFSFELLEFNFEKQYAVFEVSVSSGTYIRSIAKDLAKYCNSSAILTSLKR 192
>UniRef50_Q1VKI1 Cluster: TRNA pseudouridine synthase B; n=1;
Psychroflexus torquis ATCC 700755|Rep: TRNA
pseudouridine synthase B - Psychroflexus torquis ATCC
700755
Length = 291
Score = 41.5 bits (93), Expect = 0.026
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
IK+ K K GHSGTLDP G +++ + T+L +N+ K Y
Sbjct: 25 IKKTYKFRKVGHSGTLDPNAEGLMLIATNGFTKLFDYIENSDKTY 69
>UniRef50_P74696 Cluster: tRNA pseudouridine synthase B; n=2;
Chroococcales|Rep: tRNA pseudouridine synthase B -
Synechocystis sp. (strain PCC 6803)
Length = 296
Score = 41.5 bits (93), Expect = 0.026
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV 480
+ V+ ++R+L+ ++ GH GTLDP G L + + ATRL+ A K+Y A+
Sbjct: 17 DCVAKVRRLLRQKRVGHGGTLDPLAEGVLPLAVGSATRLLPYLPGA-KQYQAL 68
>UniRef50_Q2RMR8 Cluster: tRNA pseudouridine synthase B; n=7;
Alphaproteobacteria|Rep: tRNA pseudouridine synthase B -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 308
Score = 41.5 bits (93), Expect = 0.026
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV+ ++R + A K GH GTLDP +G L + AT+ V + K Y
Sbjct: 26 DVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFGEATKTVSYVMDGTKVY 75
>UniRef50_Q8CXQ2 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma penetrans|Rep: tRNA pseudouridine synthase B
- Mycoplasma penetrans
Length = 232
Score = 41.5 bits (93), Expect = 0.026
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+V+ IK+ +K GH+GTLDP TG L+V + T+ + K+YVA
Sbjct: 32 QVIQIIKKYYGLKKIGHAGTLDPLATGLLLVATNSKTKELNELILENKKYVA 83
>UniRef50_Q5FQM1 Cluster: tRNA pseudouridine synthase B; n=1;
Gluconobacter oxydans|Rep: tRNA pseudouridine synthase B
- Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 333
Score = 41.5 bits (93), Expect = 0.026
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
P ++V+ ++ A+K GH GTLDP +G L + +ATR + +A K Y
Sbjct: 21 PTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFGKATRTIPYIMDATKRY 74
>UniRef50_Q0EZ77 Cluster: TRNA pseudouridine synthase B; n=1;
Mariprofundus ferrooxydans PV-1|Rep: TRNA pseudouridine
synthase B - Mariprofundus ferrooxydans PV-1
Length = 307
Score = 41.1 bits (92), Expect = 0.034
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 352 KAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
K K GH+GTLDP TG L + + ATR + +A K Y F+L
Sbjct: 33 KRIKAGHAGTLDPLATGMLPILLGEATRYAEMGLSADKSYRVSFDL 78
Score = 39.5 bits (88), Expect = 0.10
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 666 VSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXKEGMXTMHDILNAQ 824
V C G+YIR++ +G LG+GG + LRR+ +G G E M + L AQ
Sbjct: 168 VDCSKGTYIRSLARDIGAALGMGGCVTALRRLSTG--GWPEAMMVTLEQLQAQ 218
>UniRef50_P59883 Cluster: tRNA pseudouridine synthase B; n=1;
Pirellula sp.|Rep: tRNA pseudouridine synthase B -
Rhodopirellula baltica
Length = 348
Score = 41.1 bits (92), Expect = 0.034
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +1
Query: 349 LKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVEN 507
L+ K GH+GTLDP G +++ I A RL GK Y+A F L + E+
Sbjct: 40 LRKLKVGHTGTLDPLAEGLVLLAIGSAARLTPWVLQHGKRYLADFRLGVSSES 92
>UniRef50_A6QYY9 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 450
Score = 40.7 bits (91), Expect = 0.045
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEA 540
K GH GTLDP TG LI + R T+ + + K Y AV +A + V + + A
Sbjct: 83 KIGHGGTLDPMATGVLIAGVGRGTKELNNFLACTKSYEAVVLFGAATDTYDSVGKVVSRA 142
Query: 541 AWSSI 555
+ I
Sbjct: 143 PYEHI 147
>UniRef50_Q30WI7 Cluster: tRNA pseudouridine synthase B; n=4;
Desulfovibrionaceae|Rep: tRNA pseudouridine synthase B -
Desulfovibrio desulfuricans (strain G20)
Length = 309
Score = 40.3 bits (90), Expect = 0.060
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAG-KEYVAVFN 486
P ++ IKR L +K GH+GTLDP G L+V + + T++ G K Y
Sbjct: 21 PTSAHCIARIKR-LGQKKIGHAGTLDPMAQGVLLVLLGQCTKISGYLMEGGEKIYSGTLE 79
Query: 487 LHSAVENIQKVTQGLGEAAWSSIPE 561
L + + L A W+ + E
Sbjct: 80 LGRTTDTWDDEGETLSTADWTHVTE 104
>UniRef50_Q9PNJ2 Cluster: tRNA pseudouridine synthase B; n=17;
Campylobacterales|Rep: tRNA pseudouridine synthase B -
Campylobacter jejuni
Length = 272
Score = 40.3 bits (90), Expect = 0.060
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA-----VFNLH 492
+S +K+ K +K G+SGTLDP G LIV + T+L + + K Y A V++L
Sbjct: 19 LSTLKKKYKNKKAGYSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLS 78
Query: 493 SAVENIQKV 519
+NI+++
Sbjct: 79 LDDQNIKEI 87
>UniRef50_Q6MMS4 Cluster: tRNA pseudouridine synthase B; n=1;
Bdellovibrio bacteriovorus|Rep: tRNA pseudouridine
synthase B - Bdellovibrio bacteriovorus
Length = 308
Score = 40.3 bits (90), Expect = 0.060
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV+ ++RIL GHSGTLDP +G + ++ T+L + K Y
Sbjct: 23 DVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYILEGDKGY 72
Score = 35.1 bits (77), Expect = 2.2
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +3
Query: 552 YSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGV 731
Y+RG + ++ K+ ++ +D + ++ D F + C GSYIRT LG LG
Sbjct: 136 YARGEQEVTIPKKVMKF---WDIEPVEIGSDW--AEFDIKCSKGSYIRTWIDLLGKALGC 190
Query: 732 GGQMIELRRVRS 767
G M LRR S
Sbjct: 191 GAAMSGLRRTWS 202
>UniRef50_A0LE16 Cluster: TRNA pseudouridine synthase B; n=1;
Magnetococcus sp. MC-1|Rep: TRNA pseudouridine synthase
B - Magnetococcus sp. (strain MC-1)
Length = 319
Score = 39.5 bits (88), Expect = 0.10
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 322 EVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+VV + R KA K GH GTLDP G L + + AT+ N K Y
Sbjct: 27 QVVERVIRTTKANKAGHGGTLDPFSEGVLPIALGEATKTSGMVLNGDKSY 76
>UniRef50_Q98Q19 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma pulmonis|Rep: tRNA pseudouridine synthase B -
Mycoplasma pulmonis
Length = 282
Score = 39.5 bits (88), Expect = 0.10
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 358 EKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
+K GHSGTLDP+ TG L++ D T+L+ K Y A L
Sbjct: 27 KKIGHSGTLDPEATGLLLLASDEDTKLLDYVDKKFKSYRATMIL 70
>UniRef50_P59879 Cluster: tRNA pseudouridine synthase B; n=1;
Mycoplasma gallisepticum|Rep: tRNA pseudouridine
synthase B - Mycoplasma gallisepticum
Length = 218
Score = 39.5 bits (88), Expect = 0.10
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA--VFNLHS 495
K+ +K GH+GTLDP +G L+V ++ T+ + K+Y+ FN H+
Sbjct: 30 KKRFNIKKAGHNGTLDPLASGVLVVATNKRTKELSQLNQDDKQYLVKLKFNTHT 83
>UniRef50_Q609C2 Cluster: tRNA pseudouridine synthase B; n=1;
Methylococcus capsulatus|Rep: tRNA pseudouridine
synthase B - Methylococcus capsulatus
Length = 224
Score = 39.5 bits (88), Expect = 0.10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
+++L K GH+G+LDP +G L +C + AT+L ++ K Y
Sbjct: 31 RKLLDMRKAGHTGSLDPLASGILPLCFNEATKLSSYLLDSDKRY 74
>UniRef50_UPI0000E0F5A1 Cluster: tRNA pseudouridine synthase B; n=1;
alpha proteobacterium HTCC2255|Rep: tRNA pseudouridine
synthase B - alpha proteobacterium HTCC2255
Length = 331
Score = 39.1 bits (87), Expect = 0.14
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
V+ ++ + A K GH+G LDP +G L +C+ AT+ + +A K Y
Sbjct: 27 VLQKVRAMYGAAKAGHTGALDPLASGMLPICLGEATKFSQFLLDADKTY 75
>UniRef50_Q5PAY2 Cluster: tRNA pseudouridine synthase B; n=7;
Anaplasmataceae|Rep: tRNA pseudouridine synthase B -
Anaplasma marginale (strain St. Maries)
Length = 306
Score = 39.1 bits (87), Expect = 0.14
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 325 VVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
VV +K+I K GH+GTLDP TG L V + AT+ + + K Y
Sbjct: 24 VVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDGLKSY 71
Score = 35.9 bits (79), Expect = 1.3
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 624 LLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
LL D++ N F + C+ G YIR+ LG LG G + LRR G
Sbjct: 155 LLSADEESNTADFLIVCKKGVYIRSFARDLGASLGCFGYVSFLRRKSVG 203
>UniRef50_Q0UE74 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 482
Score = 38.7 bits (86), Expect = 0.18
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEA 540
K GH GTLDP TG LIV + + T+ ++ K Y V +A ++ V + + A
Sbjct: 70 KLGHGGTLDPMATGVLIVGVGKGTKCLQRFLECTKTYECVVLFGAATDSYDAVGKVVSRA 129
>UniRef50_O51743 Cluster: tRNA pseudouridine synthase B; n=3;
Borrelia burgdorferi group|Rep: tRNA pseudouridine
synthase B - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 282
Score = 38.7 bits (86), Expect = 0.18
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVF 483
IK+ + GH+GTLD +G L+ + + T+L + KEYVA F
Sbjct: 23 IKKYFNTNRVGHAGTLDKFASGILVCLVGKYTKLSGYFTSLDKEYVAEF 71
Score = 33.1 bits (72), Expect = 9.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 606 TVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGXK 785
TVY+ + L +D ++ +SC G+YIR++ L L + L+R + G+ K
Sbjct: 145 TVYNIQRLSYDFSSSLLSLKISCSKGTYIRSIARDLAYSLNSCAYVSNLKRTKVGMFRLK 204
Query: 786 E 788
+
Sbjct: 205 D 205
>UniRef50_Q7M9J1 Cluster: tRNA pseudouridine synthase B; n=2;
Helicobacteraceae|Rep: tRNA pseudouridine synthase B -
Wolinella succinogenes
Length = 291
Score = 38.3 bits (85), Expect = 0.24
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV--FNLHSAVENI 510
+KR +K G+SGTLDP G L+V TRL K Y A LHS +I
Sbjct: 40 LKRRFGVKKAGYSGTLDPFAKGVLVVAFGHYTRLFDHLNQEPKVYRATLWLGLHSDSLDI 99
Query: 511 QKV 519
+ +
Sbjct: 100 ENI 102
>UniRef50_A5EWY7 Cluster: TRNA pseudouridine synthase B; n=1;
Dichelobacter nodosus VCS1703A|Rep: TRNA pseudouridine
synthase B - Dichelobacter nodosus (strain VCS1703A)
Length = 297
Score = 37.9 bits (84), Expect = 0.32
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
+ + +A+K GH GTLDP +G L + + AT+ + A K+Y+
Sbjct: 27 RALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQYMLGADKQYL 71
>UniRef50_Q9C2G0 Cluster: Related to pseudouridine synthase; n=3;
Sordariomycetes|Rep: Related to pseudouridine synthase -
Neurospora crassa
Length = 478
Score = 37.9 bits (84), Expect = 0.32
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEA 540
K GH GTLDP TG LI+ + + T+ + K Y V ++ + +V + + +
Sbjct: 70 KIGHGGTLDPLATGVLILGVGKGTKALHDFLGCTKTYETVVVFGASTDTYDRVGKLIKKG 129
Query: 541 AWSSI 555
+S+I
Sbjct: 130 DYSTI 134
Score = 33.5 bits (73), Expect = 6.9
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 678 AGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
+G Y+R++C LG LG G M EL R R G
Sbjct: 346 SGFYVRSLCHDLGEKLGCGAMMAELVRSRQG 376
>UniRef50_Q0U423 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 317
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +1
Query: 367 GHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGE 537
GH GTLDP G LIV + RAT+ ++S K Y V L A + T +G+
Sbjct: 2 GHGGTLDPLAAGILIVGVGRATKHLQSYLACSKTYETVV-LFGASTDSYDCTGAIGQ 57
>UniRef50_Q5NQ30 Cluster: tRNA pseudouridine synthase B; n=6;
Sphingomonadales|Rep: tRNA pseudouridine synthase B -
Zymomonas mobilis
Length = 303
Score = 37.9 bits (84), Expect = 0.32
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 322 EVVSWIKRILKAE-----KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFN 486
+ VS +KR ++ K GH GTLDP +G L V + AT+L N+ K Y
Sbjct: 27 QAVSAVKRAIRIAGLPKVKVGHGGTLDPLASGVLPVALGEATKLAGYALNSDKVYAFTLA 86
Query: 487 LHSAVENIQK 516
+ +++ +
Sbjct: 87 FGAETDSLDR 96
>UniRef50_Q601U7 Cluster: tRNA pseudouridine synthase B; n=3;
Mycoplasma hyopneumoniae|Rep: tRNA pseudouridine
synthase B - Mycoplasma hyopneumoniae (strain 232)
Length = 327
Score = 37.9 bits (84), Expect = 0.32
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 334 WIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
W K L +K GH+GTLDP +G L+V + T+L++ K Y+A
Sbjct: 67 WSKTNL-IKKAGHAGTLDPLASGLLLVATEDDTKLLQYLDQKTKTYLA 113
>UniRef50_Q8I715 Cluster: TRNA pseudouridine synthase, putative;
n=7; Plasmodium|Rep: TRNA pseudouridine synthase,
putative - Plasmodium falciparum (isolate 3D7)
Length = 560
Score = 37.1 bits (82), Expect = 0.56
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV 480
K GH GTLDP G LI+ I +AT+ + K+Y+A+
Sbjct: 365 KVGHGGTLDPFAEGVLIIGIQQATKKLSDFLKCYKKYLAL 404
>UniRef50_Q980C2 Cluster: TRNA pseudouridine synthase subunit A;
n=2; Thermoprotei|Rep: TRNA pseudouridine synthase
subunit A - Sulfolobus solfataricus
Length = 89
Score = 37.1 bits (82), Expect = 0.56
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 203 VRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 319
+R + T +G P KRPI ++K+ IN+DKP P+S
Sbjct: 22 IRKDSETSDKYGYYPEKRPIEIHIKNSIINLDKPPGPTS 60
Score = 35.1 bits (77), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDP 390
P EV W+K++L K GH GTL+P
Sbjct: 58 PTSHEVAYWVKKMLNVTKAGHGGTLEP 84
>UniRef50_Q2NBZ4 Cluster: TRNA pseudouridine synthase B; n=1;
Erythrobacter litoralis HTCC2594|Rep: TRNA pseudouridine
synthase B - Erythrobacter litoralis (strain HTCC2594)
Length = 362
Score = 36.7 bits (81), Expect = 0.74
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 471
K GH GTLDP+ G L + + AT+L +A K Y
Sbjct: 42 KVGHGGTLDPEAEGVLPIALGEATKLAGRMLDASKIY 78
>UniRef50_Q5KKZ0 Cluster: Pseudouridylate synthase 4, putative; n=2;
Filobasidiella neoformans|Rep: Pseudouridylate synthase
4, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 443
Score = 36.3 bits (80), Expect = 0.97
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEA 540
K G GTLDP G L++ ++R T+ + KEY ++ + + ++ L A
Sbjct: 68 KIGQGGTLDPLADGVLVLGVNRGTKHLNQFLECSKEYESIGLIGATTTSMDADDPVLSTA 127
Query: 541 AWSSI 555
W I
Sbjct: 128 PWEHI 132
>UniRef50_Q4PA06 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 446
Score = 35.9 bits (79), Expect = 1.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 334 WIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 498
W + A K G GTLDP G L++ + T+ ++ + KEY + L SA
Sbjct: 118 WAGGVAGAPKIGQGGTLDPLADGVLVIGVGNGTKHLQKYLDCTKEYRSTGLLGSA 172
>UniRef50_Q1CVV6 Cluster: TRNA pseudouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA pseudouridine synthase B -
Myxococcus xanthus (strain DK 1622)
Length = 302
Score = 35.5 bits (78), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 663 WVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 770
W+SC G Y+R++ +G LG G + LRR G
Sbjct: 174 WLSCRGGYYVRSLARDVGRALGCGAHLSTLRRTAIG 209
>UniRef50_Q4WVJ3 Cluster: Pseudouridine synthase; n=4;
Pezizomycotina|Rep: Pseudouridine synthase - Aspergillus
fumigatus (Sartorya fumigata)
Length = 403
Score = 35.1 bits (77), Expect = 2.2
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEA 540
K GH GTLDP TG L+ + + T+ + K Y V + + K+ + + A
Sbjct: 68 KIGHGGTLDPLATGVLVTGVGKGTKSLNDFLGCTKTYETVVLFGAETDTYDKLGKIVRRA 127
Query: 541 AWSSI 555
+ I
Sbjct: 128 PYEHI 132
>UniRef50_O83859 Cluster: tRNA pseudouridine synthase B; n=1;
Treponema pallidum|Rep: tRNA pseudouridine synthase B -
Treponema pallidum
Length = 366
Score = 35.1 bits (77), Expect = 2.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
++R+L +K GH+GTLD G L++ + T+L K Y A
Sbjct: 28 VRRLLGVKKVGHTGTLDRFADGLLLLLVGGFTKLAPVMTRLEKSYEA 74
>UniRef50_Q73NP8 Cluster: tRNA pseudouridine synthase B; n=1;
Treponema denticola|Rep: tRNA pseudouridine synthase B -
Treponema denticola
Length = 357
Score = 34.7 bits (76), Expect = 3.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 328 VSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
+S +K+ L +K GH+GTLD G L++ + TRL K Y A
Sbjct: 23 MSAVKKALSTKKVGHTGTLDLFADGLLVLLTGQLTRLADIISAEKKTYEA 72
>UniRef50_A7RVT7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 121
Score = 34.3 bits (75), Expect = 3.9
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 816 LGCR-AL*XCLPXRPECRTVLV*VRSSDLPRQASDLNAHTSSGYTIQPRN*PRTPQYSCP 640
L CR + C C+T + +S L + S L+ TSS Y P +TP SCP
Sbjct: 27 LSCRTSSLYCPTPSLSCQTPSLSCPTSSLYCKTSFLSCRTSSLYCPTPSFSCQTPSLSCP 86
Query: 639 GRNPGVYCRTPS 604
+YC+TPS
Sbjct: 87 --TSSLYCQTPS 96
>UniRef50_Q6BNF1 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 323
Score = 34.3 bits (75), Expect = 3.9
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = -1
Query: 794 HAFLXALNAGPYSSEFDHLTSHAKHQT*MHTHRPDIRSSLATNPEHPNILVLVEIQEFTV 615
H+F + N YS + + L+S A T TH + SL+T +HPN E E +
Sbjct: 147 HSFGRSSNEMEYSGD-EPLSSGASDSTTPRTHGTPVMKSLSTFADHPN-----EDDEGEL 200
Query: 614 VHRPDTKLSLH 582
+HR T L+LH
Sbjct: 201 IHRV-TNLNLH 210
>UniRef50_A7Q7M7 Cluster: Chromosome undetermined scaffold_60, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_60, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 546
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 537 SCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWV 668
S + S G + +S+ + L +T YD+K++ FDQDK++ V V
Sbjct: 473 SSLHAISYGTKDVSSSRVTLADQTTYDAKVVGFDQDKDVAVLRV 516
>UniRef50_O59721 Cluster: Probable tRNA pseudouridine synthase 4;
n=1; Schizosaccharomyces pombe|Rep: Probable tRNA
pseudouridine synthase 4 - Schizosaccharomyces pombe
(Fission yeast)
Length = 407
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>UniRef50_Q2U678 Cluster: Pseudouridine synthase; n=6;
Eurotiomycetidae|Rep: Pseudouridine synthase -
Aspergillus oryzae
Length = 413
Score = 33.5 bits (73), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAV 480
K GH GTLDP TG L+ + + T+ + K Y +
Sbjct: 68 KIGHGGTLDPLATGVLVTGVGKGTKQLNDFLGCTKTYETI 107
>UniRef50_UPI0000E82002 Cluster: PREDICTED: hypothetical protein;
n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 562
Score = 33.1 bits (72), Expect = 9.1
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 283 LHQRRQTEQPQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAG 462
L Q ++ E P+LP + SWI+ EK T D K + + A+ K Q
Sbjct: 488 LDQGKKEELPELPPLPSWIRVTFLVEKQPEKETSDVKKKASQLPAVPGASSAKKQPQKKK 547
Query: 463 KE 468
KE
Sbjct: 548 KE 549
>UniRef50_Q1VK38 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 74
Score = 33.1 bits (72), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTG 402
P ++ +W + +L ++ GH GTLDP TG
Sbjct: 42 PTSHQLAAWARDLLGLDRLGHGGTLDPFATG 72
>UniRef50_Q7QZL7 Cluster: GLP_159_1151_2092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_159_1151_2092 - Giardia lamblia ATCC
50803
Length = 313
Score = 33.1 bits (72), Expect = 9.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 718 RPKCTHIVRIYDPAS-QLTQNTPIFLSWSKSRSLLSYTVLTRSCRFTADISRGP 560
RP+ T++ + DP S +LT+N PI L + ++ YTV + T D+ + P
Sbjct: 42 RPRTTNLRSVIDPRSIELTEN-PIVLEFLTNKEREPYTVRGKQAALTGDMIQAP 94
>UniRef50_Q4UE86 Cluster: RNA modification (Pseudouridylation)
protein TruB family member, putative; n=1; Theileria
annulata|Rep: RNA modification (Pseudouridylation)
protein TruB family member, putative - Theileria
annulata
Length = 171
Score = 33.1 bits (72), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 474
+ GH GTLD G L + I T+++++ KEY+
Sbjct: 67 RVGHGGTLDKYTEGVLAIGIGEGTKMLENYLKGDKEYI 104
>UniRef50_Q2GY16 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 250
Score = 33.1 bits (72), Expect = 9.1
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 340 KRILKAEKTGHSGTLDPKVTGCLIVCIDRAT 432
KR L+ K GH GTLDP TG LI+ + + T
Sbjct: 64 KRALQV-KMGHGGTLDPLATGVLILGVGKGT 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,299,725
Number of Sequences: 1657284
Number of extensions: 17820695
Number of successful extensions: 46168
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 44148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46135
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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