Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K11
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 141 1e-34
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.029
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.36
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.63
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.5
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.4
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 5.9
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 7.8
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 141 bits (341), Expect = 1e-34
Identities = 61/96 (63%), Positives = 80/96 (83%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
L+ R P LISAVKRQLR+R++Y+SKL++FD ++N+ VFW SCEAG+Y+RT+CVHLGL+LG
Sbjct: 155 LFQRPP-LISAVKRQLRIRSIYESKLIEFDNERNLAVFWASCEAGTYMRTLCVHLGLLLG 213
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
VGG M ELRRVRSG + + TMHD+L+AQW Y+
Sbjct: 214 VGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYD 249
Score = 112 bits (269), Expect = 7e-26
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+W+K+IL+ EKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEYV V L
Sbjct: 75 PSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRL 134
Query: 490 HSAVENIQKVTQGL 531
H +VE + V +
Sbjct: 135 HDSVEGERNVASAI 148
Score = 108 bits (259), Expect = 1e-24
Identities = 48/69 (69%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Frame = +2
Query: 116 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 292
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 293 VDKPSNPSS 319
+DKP+NPSS
Sbjct: 69 LDKPANPSS 77
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.029
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 361 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 477
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 185 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSPK 325
++DR + + NH +P P +P K P+ + ++ N D + S+ K
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 170 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 259
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 173 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 283
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 198 KRSKFFNNKGQ*AVSSFFT 142
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 176 LLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSPK 325
L +N D + H F N K P+SD V++ D S P SP+
Sbjct: 78 LRRNADVVGFSLPHGVKQSFENYIQKYPLSDQVENSSNIYDPSSPPDSPR 127
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 207 ALTITRRYHSATRL*NAPSLITSNLASSTSTNRATPAPRSSFMDKTYFKSRKD 365
+L ++ H ++PSL +N SS+ T P SSF + F + +D
Sbjct: 188 SLNLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQFNASQD 240
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 232 IRQLAFKTPHL*LRQIWLHQRRQTEQPQLPEVVSWIKR 345
++ L TP L +R+ L Q +T + ++PEV+ WI +
Sbjct: 974 VKFLNLSTPSLTIRKRILLQTNKTNEVEIPEVL-WISQ 1010
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,933
Number of Sequences: 5004
Number of extensions: 73294
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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