Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K11
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 3e-36
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 32 0.51
SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13) 31 0.89
SB_36464| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25364| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 149 bits (361), Expect = 3e-36
Identities = 64/99 (64%), Positives = 84/99 (84%)
Frame = +3
Query: 549 LYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLG 728
L+ R P LISAVKRQLR+RT+Y+SKLL++D ++++GVFWVSCEAG+YIRT+CVH+GL++G
Sbjct: 171 LFQRPP-LISAVKRQLRIRTIYESKLLEYDDERHLGVFWVSCEAGTYIRTLCVHIGLLMG 229
Query: 729 VGGQMIELRRVRSGIQGXKEGMXTMHDILNAQWSYEXXK 845
+G M ELRRVRSGIQ + M TMHD+L+AQW Y+ K
Sbjct: 230 IGAHMQELRRVRSGIQSENDNMATMHDVLDAQWVYDNSK 268
Score = 112 bits (269), Expect = 4e-25
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = +1
Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
P EVV+W++RIL+ EKTGHSGTLDPKVTGCLIVCID+ATRLVKSQQ AGKEYV + L
Sbjct: 91 PSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDKATRLVKSQQGAGKEYVCIVRL 150
Query: 490 HSAVE 504
H+A+E
Sbjct: 151 HNAIE 155
Score = 81.0 bits (191), Expect = 1e-15
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 8/86 (9%)
Frame = +2
Query: 86 VSLGAFQTIGDFKIEPSESVKKLDTAYWPL--------LLKNFDRLNVRTNHYTPLPFGN 241
VSL F + D +I P + KK T + +N+D+LN+RT H+TPLP G
Sbjct: 8 VSLHVFSKMADVEITPKKKHKKDKTKTDESEPGNIDLNVRRNYDKLNIRTGHFTPLPNGC 67
Query: 242 SPLKRPISDYVKSGFINVDKPSNPSS 319
SPLKR I DY+ SGFIN+DKP+NPSS
Sbjct: 68 SPLKREIKDYISSGFINLDKPANPSS 93
>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 32.3 bits (70), Expect = 0.51
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 525 LCDFLNILYG*MQVENGYVLFAGVLL*FDESRGAVYANDKATRNFRIERARMTSLF 358
LC + +YG ++GY + +L+ FD + + A D ++N IE + S+F
Sbjct: 161 LCALVQAIYGKKMSDHGYDVI-NILIGFDSAEAQMQATDNVSQNTVIEYIMINSIF 215
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 32.3 bits (70), Expect = 0.51
Identities = 31/119 (26%), Positives = 41/119 (34%)
Frame = -1
Query: 809 VVHCXHAFLXALNAGPYSSEFDHLTSHAKHQT*MHTHRPDIRSSLATNPEHPNILVLVEI 630
++H H F AL S SH Q +HT P S AT+P + +
Sbjct: 451 LLHVPHTFNQALLHSHPSPSQPSPVSHPPAQALLHTSHP----SPATHPSPKPCFTFLTL 506
Query: 629 QEFTVVHRPDTKLSLHGRYKPGASGIELHAASPXPCVTF*IFSTAECKLKTATYSLPAF 453
+ + H KP + + L SP PC TF ST C P F
Sbjct: 507 STKPCFSPSNPSPASHLSPKPCFTSLTL---SPKPCFTFLTLSTKPCFTSLTLSPKPCF 562
>SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13)
Length = 112
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 338 IHETTSGSWGCSVCRR**SQI*RNQRWGVLKASCRMVAACNG 213
I SGSW C CR WGV K C++ +AC G
Sbjct: 76 IQSIPSGSWLCQPCR-----------WGVAKPPCKLCSACGG 106
>SB_36464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +3
Query: 504 EYSKSHTGXWRSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAG 683
+ + +HT C + Y +GPR KR+ R ++ L + + + W + +G
Sbjct: 37 QMAMTHTSVPEGCEQQYLKGPRATRTPKREYARRHLFP---LFLSSSRVLSLLWSTRRSG 93
Query: 684 SYIRTMCVHLGLMLGVGGQMIELRRVRSGI 773
S G ML VG + + L+ R G+
Sbjct: 94 SGRMPFWRPRGQML-VGAENVVLKAKRRGL 122
>SB_25364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -3
Query: 768 RTVLV*VRSSDLPRQASDLNAHTSSGYTIQPRN*PRTPQYSCPGRNPGVYCRTPS*HEVV 589
RT + R+S + + S + HTSS + P RT S R P +Y RTPS +E
Sbjct: 100 RTPSIYERTSSIYERTSSIYEHTSSIHKRTPSIYERTS--SIYERTPSIYERTPSIYERT 157
Query: 588 AS 583
+S
Sbjct: 158 SS 159
>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 645 KNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMI 746
+N+ VF + C HLG LGVGGQ++
Sbjct: 145 ENLAVFRGEDGVVCIVDAYCPHLGANLGVGGQVV 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,644,727
Number of Sequences: 59808
Number of extensions: 580952
Number of successful extensions: 1490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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