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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K11
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...   144   5e-35
At5g14460.1 68418.m01692 pseudouridylate synthase TruB family pr...    63   2e-10
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    31   0.97 
At1g70100.3 68414.m08067 expressed protein                             31   1.3  
At1g70100.2 68414.m08066 expressed protein                             31   1.3  
At1g70100.1 68414.m08065 expressed protein                             31   1.3  
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ...    30   1.7  
At1g01900.1 68414.m00107 subtilase family protein contains simil...    30   2.2  
At1g10140.1 68414.m01143 expressed protein similar to EST gb|AA5...    29   3.9  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   5.2  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    29   5.2  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    29   5.2  
At1g07220.1 68414.m00768 expressed protein                             29   5.2  
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    28   6.8  
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    28   6.8  

>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score =  144 bits (350), Expect = 5e-35
 Identities = 64/91 (70%), Positives = 79/91 (86%)
 Frame = +3

Query: 564 PRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQM 743
           P LISAVKRQLR+RT+Y+SKLL++D D+++ VFWVSCEAG+YIRTMCVHLGL+LGVGG M
Sbjct: 175 PPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHM 234

Query: 744 IELRRVRSGIQGXKEGMXTMHDILNAQWSYE 836
            ELRRVRSGI G    M TMHD+++AQ+ Y+
Sbjct: 235 QELRRVRSGILGENNNMVTMHDVMDAQFVYD 265



 Score =  117 bits (282), Expect = 9e-27
 Identities = 59/88 (67%), Positives = 68/88 (77%)
 Frame = +1

Query: 310 PQLPEVVSWIKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNL 489
           P   EVV+WIKRIL+ EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV V  L
Sbjct: 91  PSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL 150

Query: 490 HSAVENIQKVTQGLGEAAWSSIPEAPGL 573
           HSAV ++ KV + L E+   ++ + P L
Sbjct: 151 HSAVPDVAKVARAL-ESLTGAVFQRPPL 177



 Score =  105 bits (253), Expect = 3e-23
 Identities = 46/85 (54%), Positives = 61/85 (71%)
 Frame = +2

Query: 65  KXKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNS 244
           K K +D     A  T GD+ I+P      +DT+ WP+LLKN+DRLNVRT HYTP+  G+S
Sbjct: 10  KKKKQDKTENDAADT-GDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 245 PLKRPISDYVKSGFINVDKPSNPSS 319
           PLKRP+ +Y++ G IN+DKP+NPSS
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSS 93


>At5g14460.1 68418.m01692 pseudouridylate synthase TruB family
           protein similar to SP|P09171 tRNA pseudouridine synthase
           B (EC 4.2.1.70) (tRNA pseudouridine 55 synthase)
           (Pseudouridylate synthase) (Uracil hydrolyase)
           {Escherichia coli O157:H7}; contains Pfam profile
           PF01509: TruB family pseudouridylate synthase (N
           terminal domain)
          Length = 540

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +1

Query: 337 IKRILKAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQK 516
           ++R++K +K GH+GTLDP  TG LIVC+ +AT++V   Q   K Y  VF L  A   +  
Sbjct: 341 LRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDA 400

Query: 517 VTQGLGEAAWSSIPE 561
            +  +   +W  I +
Sbjct: 401 DSPVIQRESWEHIKD 415



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 636 DQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRR 758
           D  +N+ +F V C  G+YIR++C  L   LG    +  LRR
Sbjct: 475 DDRQNL-IFRVICSKGTYIRSLCADLAKALGSCAHLTALRR 514


>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 80  DGVSLGAFQTIG-DFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTN-HYTPLP 232
           D V     +T+G + K EPS++VK+    Y+P+  K F R + +   +  PLP
Sbjct: 458 DDVEFVGTRTVGPEDKCEPSKAVKRAKKEYYPIRRKPFTRSSKKEGLNVEPLP 510


>At1g70100.3 68414.m08067 expressed protein
          Length = 504

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 283
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At1g70100.2 68414.m08066 expressed protein
          Length = 482

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 283
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At1g70100.1 68414.m08065 expressed protein
          Length = 467

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 LKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 283
           +K  D+ NVRTNH    P  N   K+P++  V SG
Sbjct: 236 IKKTDK-NVRTNHMRASPKSNQVTKKPVTSKVVSG 269


>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +1

Query: 403 CLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEAAWSSIPEAPGL 573
           CL  C  R  R  K+     K   A   +H A+ENI++ T+G  +AA S  PEA  L
Sbjct: 653 CLFCCGLRKNRKSKTTDKKKKNREASKQIH-ALENIEEGTKGTNDAAKS--PEAAQL 706


>At1g01900.1 68414.m00107 subtilase family protein contains
           similarity to cucumisin-like serine protease GB:AAC18851
           GI:3176874 from [Arabidopsis thaliana]
          Length = 774

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 715 PKCTHIVRIYDPASQLTQNTPIFLSWSKSRSLLSYTV 605
           P C ++V + +P     +  P  L + K+R  LSYTV
Sbjct: 702 PTCEYMVHVEEPKGVKVRVEPKVLKFQKARERLSYTV 738


>At1g10140.1 68414.m01143 expressed protein similar to EST
           gb|AA598098
          Length = 167

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 217 LHAATIRQLAFKTPHL*LRQIWLHQRRQTEQPQLPEVVSWIKRILKAEKTGHSGTLDPKV 396
           + AA++R L  K     L Q  L Q++Q +Q  LP+  S     ++ E+    G+++PKV
Sbjct: 82  VRAASVRSLGHKNEIDMLIQEKLQQQKQQKQGGLPKSSSAGMARIEEEEETEEGSVNPKV 141


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 350 KIRFIHETTSGSWGCSVCRR 291
           +I F H    G W C VCR+
Sbjct: 333 RISFTHSFEKGDWSCGVCRK 352


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 350 KIRFIHETTSGSWGCSVCRR 291
           +I FI    SG W C VCR+
Sbjct: 294 RISFISSLPSGKWSCGVCRQ 313


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 350 KIRFIHETTSGSWGCSVCRR 291
           +I FI     G W C VCRR
Sbjct: 322 RISFIRSFDQGDWSCGVCRR 341


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 295 RQTEQPQLPEVVSWIKRILKA-EKTG 369
           RQT QPQ P+   WI R L+   KTG
Sbjct: 108 RQTHQPQCPDFFRWIHRDLEPWAKTG 133


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 576 SAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIEL 752
           S ++  L  +T +D+K++ FDQDK++ V  +       +R + V +   L VG ++  +
Sbjct: 179 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNK-LRPIPVGVSADLLVGQKVFAI 236


>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 350 KIRFIHETTSGSWGCSVCRR 291
           +I F H    G W C VCRR
Sbjct: 339 RISFNHSFGQGDWSCCVCRR 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,007
Number of Sequences: 28952
Number of extensions: 393309
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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