Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K10
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   173   2e-44
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   173   3e-44
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   4.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (422), Expect = 2e-44
 Identities = 78/142 (54%), Positives = 99/142 (69%)
 Frame = +3

Query: 369 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 548
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150

Query: 549 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 728
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 729 FNKDQGLTRAFRNIPGVELLNV 794
           FN+D G+ +AFRNIPGVE++NV
Sbjct: 211 FNEDTGIVKAFRNIPGVEIVNV 232



 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/64 (81%), Positives = 58/64 (90%)
 Frame = +2

Query: 173 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 352
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 353 RSGQ 364
           RSGQ
Sbjct: 86  RSGQ 89



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 797 KLNLLKLAPGGHFGR 841
           +LNLL+LAPGGH GR
Sbjct: 234 RLNLLQLAPGGHLGR 248


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (421), Expect = 3e-44
 Identities = 78/142 (54%), Positives = 99/142 (69%)
 Frame = +3

Query: 369 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 548
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150

Query: 549 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 728
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 729 FNKDQGLTRAFRNIPGVELLNV 794
           FN+D G+ +AFRNIPGVE++NV
Sbjct: 211 FNEDAGIVKAFRNIPGVEIVNV 232



 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/64 (81%), Positives = 58/64 (90%)
 Frame = +2

Query: 173 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 352
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 353 RSGQ 364
           RSGQ
Sbjct: 86  RSGQ 89



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 797 KLNLLKLAPGGHFGR 841
           +LNLL+LAPGGH GR
Sbjct: 234 RLNLLQLAPGGHLGR 248


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 548 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLRGGEHTSTTT 384
           KLG  FNN SS+++E +     N  CQ  S L+ +       P  R   + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 155 APCTVSLFSEYTDTKGRATDRLISLL 78
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,345
Number of Sequences: 5004
Number of extensions: 70422
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)