Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K10
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               163   2e-40
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  31   0.89 
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)                        26   1.9  
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   29   3.6  
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)                    29   4.7  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.7  
SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   8.2  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   8.2  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  163 bits (395), Expect = 2e-40
 Identities = 75/142 (52%), Positives = 94/142 (66%)
 Frame = +3

Query: 369 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 548
           AFGNMCRGGRMFAPTK WR+WH                          ARGH IEKI E+
Sbjct: 88  AFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEV 147

Query: 549 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 728
           PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII
Sbjct: 148 PLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLII 207

Query: 729 FNKDQGLTRAFRNIPGVELLNV 794
           +N DQGL +AFRN+PGVEL +V
Sbjct: 208 YNNDQGLRQAFRNLPGVELQHV 229



 Score =  121 bits (291), Expect = 8e-28
 Identities = 55/64 (85%), Positives = 59/64 (92%)
 Frame = +2

Query: 176 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 355
           VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 24  VFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHR 83

Query: 356 SGQG 367
           SGQG
Sbjct: 84  SGQG 87



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 797 KLNLLKLAPGGHFGR 841
           +LNLLKL PGGH GR
Sbjct: 231 RLNLLKLCPGGHLGR 245


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 21/99 (21%), Positives = 42/99 (42%)
 Frame = -3

Query: 620 EAPQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVD 441
           + P+ D+S F +  + D    N+   G + + V    N+R D    +    GR+ +    
Sbjct: 296 QVPKGDNSSFYVNPMYD---QNRPNGGAVCSRVEQPGNQRHDTHRLSNASDGRAGVYGSP 352

Query: 440 ATVPAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGHAE 324
              P  P  +  +  ++  ++  G      G+HHHG+ +
Sbjct: 353 VKTPTSPSAKQRQRCNSVGNIARG------GHHHHGNMQ 385


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -3

Query: 836 QNDLPEPASGGSACXIQELHTGDVAESASQTLILVED---YEGSLTLDTTTVAHFTLTST 666
           Q+DL E    G     +EL++GD  ES  Q ++ V +   +EG +        H  +   
Sbjct: 638 QSDLSESRDDGFLWIRRELYSGDSVESWKQDVLYVGEKGFWEGRVDGRNGWFPHTCVEEV 697

Query: 665 KTLRLVHLKDIRPCLEAP 612
           K+ +   L D +P LE P
Sbjct: 698 KSAQTPRL-DFQPTLEFP 714


>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 818

 Score = 26.2 bits (55), Expect(2) = 1.9
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -3

Query: 632 RPCL-EAPQEDDSLFG-----LVDLLDFVGYNQGKLGNLFNNVSSSLNERWDASSSNGCC 471
           +PCL +   E  S+ G     + DLL F+   Q    + + N  ++  + W+A + +  C
Sbjct: 567 KPCLNKGGFESSSIIGDEDEYMKDLLSFLKPVQQSPTSWWGNCYTASRDGWEAKTFHQKC 626

Query: 470 QGRSP 456
            G+ P
Sbjct: 627 DGKGP 631



 Score = 22.6 bits (46), Expect(2) = 1.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 824 PEPASGGSACXIQELHTGDVAESASQTLILV 732
           P+PA+GG  C   E  T        + +I +
Sbjct: 530 PKPANGGQECKGDETETKACGTKKCEVIICI 560


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 701 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 552
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/91 (25%), Positives = 30/91 (32%)
 Frame = -3

Query: 581 DLLDFVGYNQGKLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLRGGE 402
           D+  F+ Y     GN   +       R     S+     RS       TV AP     G 
Sbjct: 282 DIKVFLVYTTVLAGNRVPHNHPHAPTRSRHGHSSSTITSRSQHQHDHVTVTAPTRSSHGH 341

Query: 401 HTSTTTHVTEGXPDRTYGYHHHGHAEFGQQH 309
            T+T T  ++   D     H H H     QH
Sbjct: 342 STNTITSRSQHQHDHVTAQHQHDHVTDQHQH 372


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 473 CQGRSPLSEVDATVPAPPGLRGGEHTSTTT 384
           C GR+P++  + TV  P GL+ GE  +  T
Sbjct: 832 CTGRNPINVSEKTVTLPFGLKAGEVVAKVT 861


>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
          Length = 165

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -3

Query: 821 EPASGGSACXIQEL-HTGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRL 651
           E AS  S     E   T   AE+A +    +E+    G +   +      T  STK LR 
Sbjct: 83  ETASSSSVFFQPETSETSAAAEAALEPFQDIEETSALGQILPSSVDAVRLTKASTK-LRD 141

Query: 650 VHLKDIRPCLEAPQEDDSLFG 588
           + LKDI  C+E    +D+ FG
Sbjct: 142 IELKDIERCIEV---EDTAFG 159


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
 Frame = -3

Query: 338  HGHAEFGQQ----HVRYPMIRHWF----GDQPPCXXXXXXXXSWT*KREHH*PGPDVWAP 183
            HG AE   Q      R   +  WF    G  PP          W  +R H   G DV  P
Sbjct: 809  HGDAEVADQATEDQFRMDRLAGWFFRTPGTPPPPRLATCQVRLW--RRSHF--GKDVKRP 864

Query: 182  *IRXGRGLAAPCTVS--LFSEYTDTKGRATDRLISLL*RSY 66
                GRGLA        L  +YTD KGR   +LI+ L  S+
Sbjct: 865  -SDTGRGLAQMRENQNILPRKYTDAKGRIRQKLINGLYDSF 904


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 200  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 325
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -3

Query: 821 EPASGGSACXIQEL-HTGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRL 651
           E AS  S     E   T   AESA +    +E+    G +   +         STK LR 
Sbjct: 81  ETASSSSVFFQPETSETSAAAESALEPFQDIEETSALGQILPSSVDAVRLMKASTK-LRD 139

Query: 650 VHLKDIRPCLEAPQEDDSLFG 588
           + LKDI+ C+E    +D+ FG
Sbjct: 140 IELKDIKRCIEV---EDTAFG 157


>SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 839 VQNDLPEPASGGSACXIQEL-HTGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTS 669
           +Q+   E AS  S     E   T   AE+A +    +E+    G +   +         S
Sbjct: 56  LQSCRDETASSSSVFFQPETSETSAAAEAALEPFQDIEETSALGQILPSSVDAVRLMKAS 115

Query: 668 TKTLRLVHLKDIRPCLEAPQEDDSLFGLVDL 576
           TK LR + LKDI+ C+E    +D+ FG  ++
Sbjct: 116 TK-LRDIELKDIKRCIEV---EDTAFGEAEI 142


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 170  GRGLAAPCTVSLFSEYTDTKGRATDRLI 87
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 194 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 316
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 398 TSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRYPMIRH 285
           T+ TT +T       Y YHHH H      H  +   RH
Sbjct: 292 TTITTAITITTATPPYRYHHHHHHRHHHHHHHHHHQRH 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,571,283
Number of Sequences: 59808
Number of extensions: 630813
Number of successful extensions: 1919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)