Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K10
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   161   4e-40
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    30   2.4  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   5.5  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   5.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   5.5  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   9.5  
U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical pr...    23   9.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  161 bits (392), Expect = 4e-40
 Identities = 74/142 (52%), Positives = 96/142 (67%)
 Frame = +3

Query: 369 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 548
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E+
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEV 149

Query: 549 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 728
           PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 729 FNKDQGLTRAFRNIPGVELLNV 794
           + +D    RAFRNIPGV+++NV
Sbjct: 210 YGQDAECARAFRNIPGVDVMNV 231



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/64 (68%), Positives = 52/64 (81%)
 Frame = +2

Query: 176 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 355
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 356 SGQG 367
           SGQG
Sbjct: 86  SGQG 89



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 797 KLNLLKLAPGGHFGR 841
           +LNLLKLAPGGH GR
Sbjct: 233 RLNLLKLAPGGHLGR 247


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 204
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 425 PPGLRGGEHTSTTTHVTEGXPD--RTYGYHHHGHAEFGQQHVRYPMIRHWF 279
           P GLRG   T T  + +    +  R + YH + + +F      Y   RHW+
Sbjct: 550 PIGLRGINFTDTDRNASRTFSNIIRRFSYHQNPNFQFDGSWAAYEPRRHWY 600


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 707 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 555
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 558 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 734
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 735 KD 740
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 558 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 734
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 735 KD 740
           KD
Sbjct: 473 KD 474


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = -3

Query: 431 PAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGH---AEFGQQHVRYPMIRHWFGDQPPC 261
           P  PG R G H     H  +G     +G+HHH H     F   H  +     W    PPC
Sbjct: 388 PHCPG-RHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 446  VDATVPAPPGLRGGEHTSTTTHVTEGXPDRT-YGYHHHGHAEFG 318
            V+A++P    L  G+H S   H  EG  D + + +HHH    FG
Sbjct: 878  VEASLPFYEKLWYGDHASHQGH--EGHGDHSGHNHHHHKETSFG 919


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 563 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 423
           GY  G + N+  N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 761 ESASQTLILVEDYEGSLTLDTTTVAHFTL 675
           E + + L++++ +E + TL  TTVA+F+L
Sbjct: 303 EDSVKELVILDQWEEAKTLSLTTVAYFSL 331


>U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical
           protein F22H10.2 protein.
          Length = 102

 Score = 23.4 bits (48), Expect(2) = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 347 YHHHGHAEFGQQH 309
           +HHHG   FG  H
Sbjct: 84  HHHHGGHHFGHHH 96



 Score = 23.0 bits (47), Expect(2) = 9.9
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -3

Query: 428 APPGLRGGE--HTSTTTHVTEGXPDRTYGYHHHGH 330
           APP + GG   +   T HV         G HHHGH
Sbjct: 33  APPPVFGGPGGYAPPTVHVHNN------GGHHHGH 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,118
Number of Sequences: 27780
Number of extensions: 449756
Number of successful extensions: 1374
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)