Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K09
(865 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 61 1e-09
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 44 1e-04
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 42 5e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 41 0.001
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 40 0.002
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 40 0.003
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 39 0.004
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 39 0.004
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 39 0.004
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 39 0.005
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 38 0.009
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 38 0.011
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 38 0.011
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 38 0.011
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 38 0.011
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 37 0.015
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 37 0.015
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 37 0.020
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 37 0.020
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 37 0.020
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 37 0.020
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.026
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 36 0.026
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 36 0.026
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 36 0.026
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 36 0.026
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.035
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 36 0.035
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 36 0.046
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 36 0.046
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 35 0.061
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 35 0.080
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 35 0.080
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 34 0.11
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 33 0.19
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 33 0.19
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 33 0.19
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 33 0.19
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 33 0.19
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 33 0.25
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 33 0.25
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 33 0.25
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 33 0.25
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.32
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 33 0.32
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 33 0.32
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 32 0.43
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 32 0.43
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 32 0.43
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 32 0.57
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 32 0.57
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 32 0.57
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 31 0.75
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.75
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 31 0.75
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 31 0.75
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.99
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 31 0.99
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 31 0.99
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 1.3
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 1.3
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 31 1.3
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 1.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 1.3
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 31 1.3
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 1.3
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.7
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 30 1.7
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 30 1.7
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 1.7
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 1.7
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 30 2.3
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 30 2.3
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 30 2.3
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 30 2.3
At4g23890.1 68417.m03436 expressed protein hypothetical protein,... 30 2.3
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 30 2.3
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 2.3
At2g19230.1 68415.m02245 leucine-rich repeat protein kinase, put... 30 2.3
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 30 2.3
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 30 2.3
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 29 3.0
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 29 3.0
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 3.0
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 29 3.0
At5g37560.1 68418.m04523 zinc finger protein-related contains we... 29 4.0
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 4.0
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 4.0
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 4.0
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 29 4.0
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 29 4.0
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 4.0
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 29 4.0
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.0
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 5.3
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 29 5.3
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 5.3
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 7.0
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 28 7.0
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 7.0
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 7.0
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 28 7.0
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 28 7.0
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 28 9.2
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 28 9.2
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 28 9.2
At2g24680.1 68415.m02947 transcriptional factor B3 family protei... 28 9.2
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil... 28 9.2
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil... 28 9.2
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 60.9 bits (141), Expect = 1e-09
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 4/222 (1%)
Frame = +2
Query: 149 PEELEQMFSKKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQV 328
P + + F K I T + + ++D T +A+SLS N++++Y +
Sbjct: 22 PAQNVKKFGLKNSIQTNFGSDYVFQIVPKIDWTA---IAVSLSTNTVKLYSPVTGQYYGE 78
Query: 329 CRLHGHKEATLTQVVFSPKE---DNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILR 499
C+ GH + T+ Q+ FS ++L+S DG ++ WD R+ ++EI
Sbjct: 79 CK--GHSD-TVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDTGNDQEIFS 135
Query: 500 PYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWR 679
+ + N +L G + ++ +D R K + SH DDVTQ+ +
Sbjct: 136 -FSYGGAADN--LLAGGCK-----EQVLLWDWRNSKQVACLEESHMDDVTQVHFVPNKPN 187
Query: 680 SLXSGSLDGLINVYXIXXEXEEDALLYS-LNVENSIDXLSWL 802
L S S+DGLI ++ + +D L S +NV SI + +L
Sbjct: 188 KLLSASVDGLICLFNTEGDINDDDHLESVINVGTSIGKIGFL 229
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 44.4 bits (100), Expect = 1e-04
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Frame = +2
Query: 341 GHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDV 520
GH A++ + +SP E+N+ S +DG V +WDIR G S L +K ++ +
Sbjct: 267 GHT-ASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADV------NVI 319
Query: 521 SCNGIVLCTGSQLVDDDAYLVFFDQRKPK---PLGGYWNSHTDDVTQIKSPRLEWRSLXS 691
S N + C + DD + + D R K + ++ H +T I+ E +L
Sbjct: 320 SWNRLASCMLASGSDDGTFSI-RDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLAV 378
Query: 692 GSLDGLINVYXIXXEXEED 748
S D + ++ + E +E+
Sbjct: 379 TSGDNQLTIWDLSLEKDEE 397
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +2
Query: 227 IHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYS 406
IH L ++ ++ DN+I+ + L D SL +C + GHK T VV + +LYS
Sbjct: 589 IHALAYSEYGHVYTGSGDNTIKAWSLQDGSL--LCTMSGHKSVVSTLVVVN----GVLYS 642
Query: 407 TGLDGLVKLWDI 442
DG V+LW +
Sbjct: 643 GSWDGTVRLWSL 654
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 40.7 bits (91), Expect = 0.001
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 9/211 (4%)
Frame = +2
Query: 161 EQMFSKKYKIVTEHAVSLLHS---YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 331
+ MF + Y T + + + YI + +L +S SD+ + KL D +C
Sbjct: 77 DDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDML--IKLWDWEKGWLC 134
Query: 332 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPY 505
GH + QV F+PK+ N S LD +K+W++ GS + + L+
Sbjct: 135 TQIFEGHSHYVM-QVTFNPKDTNTFASASLDRTIKIWNL---GSPDPNFTLDAH--LKGV 188
Query: 506 ECMDVSCNG--IVLCTGSQLVDDDAYLVFFDQRKP--KPLGGYWNSHTDDVTQIKSPRLE 673
C+D G L TGS DD V+ Q K + L G HT +V+ + S E
Sbjct: 189 NCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLEG----HTHNVSAV-SFHPE 240
Query: 674 WRSLXSGSLDGLINVYXIXXEXEEDALLYSL 766
+ +GS DG + ++ E+ L Y L
Sbjct: 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGL 271
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 341 GHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEY 472
GH + ++ + F PK+ +LL S G+D VK+WD+ G C+ Y
Sbjct: 280 GHTKG-VSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTY 322
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
L S D ++ ++++ S + R+ HK + +T V F+P +DN S +DG V++WD
Sbjct: 377 LLSSSVDETVRLWRVGSSD--ECIRVFSHK-SFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
Query: 440 I 442
+
Sbjct: 434 V 434
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 39.1 bits (87), Expect = 0.004
Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 9/211 (4%)
Frame = +2
Query: 161 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 331
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 332 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPY 505
GH + QVVF+PK+ N S LD +K+W++ GS + + + +
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL---GSPDPNFTLDAHQ--KGV 188
Query: 506 ECMDVSCNG--IVLCTGSQLVDDDAYLVFFDQRKP--KPLGGYWNSHTDDVTQIKSPRLE 673
C+D G L TGS DD V+ Q K + L G HT +V+ + E
Sbjct: 189 NCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLDG----HTHNVSAV-CFHPE 240
Query: 674 WRSLXSGSLDGLINVYXIXXEXEEDALLYSL 766
+ +GS DG + ++ E+ L Y L
Sbjct: 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGL 271
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 39.1 bits (87), Expect = 0.004
Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 9/211 (4%)
Frame = +2
Query: 161 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 331
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 332 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPY 505
GH + QVVF+PK+ N S LD +K+W++ GS + + + +
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL---GSPDPNFTLDAHQ--KGV 188
Query: 506 ECMDVSCNG--IVLCTGSQLVDDDAYLVFFDQRKP--KPLGGYWNSHTDDVTQIKSPRLE 673
C+D G L TGS DD V+ Q K + L G HT +V+ + E
Sbjct: 189 NCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLDG----HTHNVSAV-CFHPE 240
Query: 674 WRSLXSGSLDGLINVYXIXXEXEEDALLYSL 766
+ +GS DG + ++ E+ L Y L
Sbjct: 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGL 271
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 39.1 bits (87), Expect = 0.004
Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 9/211 (4%)
Frame = +2
Query: 161 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 331
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWENGWAC 134
Query: 332 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPY 505
GH + QVVF+PK+ N S LD +K+W++ GS + + + +
Sbjct: 135 TQIFEGHSHYVM-QVVFNPKDTNTFASASLDRTIKIWNL---GSPDPNFTLDAHQ--KGV 188
Query: 506 ECMDVSCNG--IVLCTGSQLVDDDAYLVFFDQRKP--KPLGGYWNSHTDDVTQIKSPRLE 673
C+D G L TGS DD V+ Q K + L G HT +V+ + E
Sbjct: 189 NCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLDG----HTHNVSAV-CFHPE 240
Query: 674 WRSLXSGSLDGLINVYXIXXEXEEDALLYSL 766
+ +GS DG + ++ E+ L Y L
Sbjct: 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGL 271
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 38.7 bits (86), Expect = 0.005
Identities = 40/136 (29%), Positives = 60/136 (44%)
Frame = +2
Query: 392 NLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDD 571
+LL S G D LVKLWD R+G + + +L + + NG L T S+ D
Sbjct: 281 SLLVSGGKDQLVKLWDTRSGRE-LCSLHGHKNIVL----SVKWNQNGNWLLTASK----D 331
Query: 572 AYLVFFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWRSLXSGSLDGLINVYXIXXEXEEDA 751
+ +D R K L + HT DVT + SGS DG I + + E +
Sbjct: 332 QIIKLYDIRTMKELQSF-RGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIE 390
Query: 752 LLYSLNVENSIDXLSW 799
+ + +NS+ L+W
Sbjct: 391 IPNA--HDNSVWDLAW 404
Score = 35.1 bits (77), Expect = 0.061
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 263 AISLSDNSIEIYKLSDS-SLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
++ +S ++ KL D+ S ++C LHGHK L+ V + N L + D ++KL+D
Sbjct: 281 SLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLS--VKWNQNGNWLLTASKDQIIKLYD 338
Query: 440 IR 445
IR
Sbjct: 339 IR 340
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 37.9 bits (84), Expect = 0.009
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Frame = +2
Query: 215 LHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDS--SLHQVCRLHGHKEATLTQVVFSPKE 388
+HS +GTK LA D + I+ + S + L GH ++ + Q+ + PK
Sbjct: 23 VHSVAWNSNGTK---LASGSVDQTARIWNIEPHGHSKAKDLELKGHTDS-VDQLCWDPKH 78
Query: 389 DNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDD 568
+L+ + D V+LWD R+ G C + + E I Y+ +G + G++ DD
Sbjct: 79 SDLVATASGDKSVRLWDARS-GKCTQQVELSGENINITYK-----PDGTHVAVGNR--DD 130
Query: 569 DAYLVFFDQRKPKPL 613
+ L D RK KPL
Sbjct: 131 E--LTILDVRKFKPL 143
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 37.5 bits (83), Expect = 0.011
Identities = 32/109 (29%), Positives = 53/109 (48%)
Frame = +2
Query: 395 LLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDA 574
L S GLD L ++WD+R G S +L ++ ++P ++ S NG L +G +D
Sbjct: 395 LAASCGLDSLARVWDLRTGRS-ILVFQGH----IKPVFSVNFSPNGYHLASGG----EDN 445
Query: 575 YLVFFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWRSLXSGSLDGLINVY 721
+D R K L +H + V+Q+K E L + S D +N++
Sbjct: 446 QCRIWDLRMRKSL-YIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIW 493
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 562 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 619
Query: 431 LWDIRAGGSCVLEYKDEEEEI 493
WDI A SCV K ++
Sbjct: 620 FWDINA--SCVRAVKGASTQV 638
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 431 LWDIRAGGSCVLEYKDEEEEI 493
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 431 LWDIRAGGSCVLEYKDEEEEI 493
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 431 LWDIRAGGSCVLEYKDEEEEI 493
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S LA S D +I+I+ SD + + + GH A + + F PK+ LL S + ++
Sbjct: 564 STQLATSSFDKTIKIWDASDPG-YFLRTISGHA-APVMSIDFHPKKTELLCSCDSNNDIR 621
Query: 431 LWDIRAGGSCVLEYKDEEEEI 493
WDI A SCV K ++
Sbjct: 622 FWDINA--SCVRAVKGASTQV 640
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 37.5 bits (83), Expect = 0.011
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 9/211 (4%)
Frame = +2
Query: 161 EQMFSKKYKIVTEHAVSLL--HS-YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVC 331
+ M+ + Y T V + HS YI + +L +S SD+ + KL D C
Sbjct: 77 DDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDML--IKLWDWEKGWAC 134
Query: 332 R--LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPY 505
GH + QV F+PK+ N S LD +K+W++ GS + + + +
Sbjct: 135 TQIFEGHSHYVM-QVTFNPKDTNTFASASLDRTIKIWNL---GSPDPNFTLDAHQ--KGV 188
Query: 506 ECMDVSCNG--IVLCTGSQLVDDDAYLVFFDQRKP--KPLGGYWNSHTDDVTQIKSPRLE 673
C+D G L TGS DD V+ Q K + L G HT +V+ + E
Sbjct: 189 NCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLEG----HTHNVSAV-CFHPE 240
Query: 674 WRSLXSGSLDGLINVYXIXXEXEEDALLYSL 766
+ +GS DG + ++ E+ L Y L
Sbjct: 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGL 271
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 251 SLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVK 430
S ++ + LSD S + +DS+L V GH + L F NL+Y+ D
Sbjct: 131 STSIVVGLSDGSASVVSFTDSNLETVQEWKGH-DFELWTASFDLNNPNLVYTGSDDCKFS 189
Query: 431 LWDIR 445
WDIR
Sbjct: 190 CWDIR 194
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +2
Query: 254 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
L LA S D ++ ++ +D+ + + GH + +T + F P +D+L+ S D ++
Sbjct: 706 LRLATSSFDKTVRVWD-ADNKGYSLRTFMGHS-SMVTSLDFHPIKDDLICSCDNDNEIRY 763
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
W I GSC YK +I
Sbjct: 764 WSIN-NGSCTRVYKGGSTQI 782
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 36.7 bits (81), Expect = 0.020
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 233 RLDGTKSLNLAISLSDNSIEIYK-LSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYST 409
R T S+ + S D +I ++ +S + + HG E +T VF+ K+ + S+
Sbjct: 181 RYSSTGSIYITAS-KDGAIRLFDGVSAKCVRSIGNAHGKSE--VTSAVFT-KDQRFVLSS 236
Query: 410 GLDGLVKLWDIRAGGSCVLEYKDEEEEILR 499
G D VKLW+I G V EY + LR
Sbjct: 237 GKDSTVKLWEI-GSGRMVKEYLGAKRVKLR 265
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 36.7 bits (81), Expect = 0.020
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 233 RLDGTKSLNLAISLSDNSIEIYK-LSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYST 409
R T S+ + S D +I ++ +S + + HG E +T VF+ K+ + S+
Sbjct: 273 RYSSTGSIYITAS-KDGAIRLFDGVSAKCVRSIGNAHGKSE--VTSAVFT-KDQRFVLSS 328
Query: 410 GLDGLVKLWDIRAGGSCVLEYKDEEEEILR 499
G D VKLW+I G V EY + LR
Sbjct: 329 GKDSTVKLWEI-GSGRMVKEYLGAKRVKLR 357
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 36.7 bits (81), Expect = 0.020
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
DNSI+++ L + L + L H ++ + + D L S LD VK+W GG+
Sbjct: 286 DNSIKVWSLDN--LQCIQTLTEHTSVVMSLICW----DQFLLSCSLDNTVKIWAATEGGN 339
Query: 458 CVLEYKDEEE-EILRPYECMDVSCNGIVLCT 547
+ Y +EE +L D ++LC+
Sbjct: 340 LEVTYTHKEEYGVLALCGVHDAEAKPVLLCS 370
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +2
Query: 221 SYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLL 400
S+++RL+ T + + + I ++ ++ +S V H + V + +
Sbjct: 36 SHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMA--VGFQCDAKWM 93
Query: 401 YSTGLDGLVKLWDIRAGGSCVLEYK 475
YS DG VK+WD+RA G C EY+
Sbjct: 94 YSGSEDGTVKIWDLRAPG-CQKEYE 117
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 36.3 bits (80), Expect = 0.026
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
D +++I+ +SD S + GH + L + + S G DGL+KLW++
Sbjct: 562 DKTVKIWAISDGSCLKT--FEGHTSSVLRASFIT--DGTQFVSCGADGLLKLWNVNT-SE 616
Query: 458 CVLEYKDEEEEI 493
C+ Y E+++
Sbjct: 617 CIATYDQHEDKV 628
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 341 GHKEATLTQVVFSPKED-NLLYSTGLDGLVKLWDIRA 448
GHK ++ ++F P + N+L S D V++WD+ A
Sbjct: 142 GHK-GVVSSILFHPDSNKNILISGSDDATVRVWDLNA 177
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 36.3 bits (80), Expect = 0.026
Identities = 40/146 (27%), Positives = 60/146 (41%)
Frame = +2
Query: 308 DSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEE 487
D L+ + GH E+ + V + K +NL S G DG + +WD R + K E
Sbjct: 204 DKVLNAMFVYEGH-ESAIADVSWHMKNENLFGSAGEDGRLVIWDTRT-NQMQHQVKVHER 261
Query: 488 EILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIKSPR 667
E+ Y + N VL T S D+ + FD RK +SH +V Q++
Sbjct: 262 EV--NYLSFN-PFNEWVLATAS----SDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDP 314
Query: 668 LEWRSLXSGSLDGLINVYXIXXEXEE 745
L S D + V+ + EE
Sbjct: 315 NHETVLASSGEDRRLMVWDLNRVGEE 340
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 36.3 bits (80), Expect = 0.026
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA SD +++I+ + Q + GH T + F+P + + S GLD +VK+WD
Sbjct: 115 LASGSSDANLKIWDIRKKGCIQTYK--GHSRGIST-IRFTP-DGRWVVSGGLDNVVKVWD 170
Query: 440 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGG 619
+ A G + E+K E P +D +L TGS D + F+D + +G
Sbjct: 171 LTA-GKLLHEFKFHE----GPIRSLDFHPLEFLLATGSA----DRTVKFWDLETFELIG- 220
Query: 620 YWNSHTDDVTQIKSPRL--EWRSLXSGSLDGLINVY 721
S + T ++S + + R+L G LD + VY
Sbjct: 221 ---STRPEATGVRSIKFHPDGRTLFCG-LDDSLKVY 252
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 335 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
L GH++ ++ V +S + +LY+ G DG ++ WDIR G
Sbjct: 186 LSGHRDGVMS-VEWSTSSEWVLYTGGCDGAIRFWDIRRAG 224
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 335 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
L GH++ ++ V +S + +LY+ G DG ++ WDIR G
Sbjct: 186 LSGHRDGVMS-VEWSTSSEWVLYTGGCDGAIRFWDIRRAG 224
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKE-ATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
D + +Y + QV + HG E +T + FS L + +WD G
Sbjct: 207 DGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLG- 265
Query: 455 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
VL+ +++ C+ +S +G LCTGS
Sbjct: 266 EVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 298
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKE-ATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
D + +Y + QV + HG E +T + FS L + +WD G
Sbjct: 269 DGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLG- 327
Query: 455 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
VL+ +++ C+ +S +G LCTGS
Sbjct: 328 EVVLDLGLQQDSHRNRISCLGLSADGSALCTGS 360
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +2
Query: 236 LDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGL 415
L +KS +L S D ++ ++ LS + +V H + +T + F+P +DN S L
Sbjct: 474 LSWSKSQHLLSSSMDKTVRLWDLSSKTCLKV---FSHSDY-VTCIQFNPVDDNYFISGSL 529
Query: 416 DGLVKLWDI 442
D V++W I
Sbjct: 530 DAKVRIWSI 538
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 35.5 bits (78), Expect = 0.046
Identities = 30/98 (30%), Positives = 45/98 (45%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA SD ++ ++ Q + GH T + FSP + + S GLD +VK+WD
Sbjct: 64 LASGSSDTNLRVWDTRKKGCIQTYK--GHTRGIST-IEFSP-DGRWVVSGGLDNVVKVWD 119
Query: 440 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
+ A G + E+K E P +D +L TGS
Sbjct: 120 LTA-GKLLHEFKCHE----GPIRSLDFHPLEFLLATGS 152
Score = 30.3 bits (65), Expect = 1.7
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Frame = +2
Query: 335 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECM 514
L GH + + V F+ E+ L+ + G++KLWD+ EE +++R +
Sbjct: 3 LCGHT-SPVDSVAFN-SEEVLVLAGASSGVIKLWDL------------EESKMVRAFTGH 48
Query: 515 DVSCNGIVLCTGSQLV---DDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIK-SPRLEWRS 682
+C+ + + + D L +D RK + Y HT ++ I+ SP W
Sbjct: 49 RSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTY-KGHTRGISTIEFSPDGRW-- 105
Query: 683 LXSGSLDGLINVYXI 727
+ SG LD ++ V+ +
Sbjct: 106 VVSGGLDNVVKVWDL 120
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 35.1 bits (77), Expect = 0.061
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +2
Query: 374 FSPKEDNLLYSTGLDGLVKLWDIRAGG-SCVLEYKDEEEEILR--PYECMDVSCNGIVLC 544
FSP + L S+ +DG +++WD +G L+Y+ +E ++ P C+D S + +L
Sbjct: 221 FSP-DGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLA 279
Query: 545 TGSQ 556
+GSQ
Sbjct: 280 SGSQ 283
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 34.7 bits (76), Expect = 0.080
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 338 HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMD 517
HGH++ T+ V FSP S G D + LWD R G + V + + + L C+D
Sbjct: 289 HGHED-TVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADL---HCVD 344
Query: 518 VS-CNGIVLCTGSQLVDDDAYLVFFDQRK 601
+ + ++ TGS D + FD+RK
Sbjct: 345 WNPHDDNLILTGSA----DNTVRLFDRRK 369
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 275 SDNSIEIY---KLSDSSLHQ-VCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+DN++ ++ KL+ + + + + GHK A L V +SP + ++ S+ DGL+ +WD
Sbjct: 358 ADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLC-VQWSPDKSSVFGSSAEDGLLNIWD 415
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 311 SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEE 490
S+ + V +++GHK T + FSP + L + G DG+VK+W I S + + ++E
Sbjct: 186 SAAYMVQKINGHKGKIWT-LKFSP-DGKYLATGGEDGVVKIWRITLSDSLLASFLRQQEP 243
Query: 491 I 493
I
Sbjct: 244 I 244
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRL-HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
LA+SL++NS+E Y L S + + H + + V S EDN L + VK+W
Sbjct: 375 LALSLNNNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLS--EDNTLLMSTSHSEVKIW 432
Query: 437 DIRAGGSCV 463
+ + GSC+
Sbjct: 433 N-PSTGSCL 440
Score = 29.1 bits (62), Expect = 4.0
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
D +++I+ L H+ HG + V + + L+S G D LVK WD
Sbjct: 603 DKNLKIWGLDFGDCHKSIFAHGDSVMGVKFV----RNTHYLFSIGKDRLVKYWDADK-FE 657
Query: 458 CVLEYKDEEEEILRPYECMDVSCNGIVLCTGS-----QLVDDDAYLVFFDQRKPKPLGGY 622
+L + EI C+ +S G L TGS + D F ++ K K L
Sbjct: 658 HLLTLEGHHAEIW----CLAISNRGDFLVTGSHDRSMRRWDRSEEPFFLEEEKEKRLEEL 713
Query: 623 WNSHTDDVTQIKSPRLE 673
+ S D+ + +E
Sbjct: 714 FESEIDNAADDRHGPME 730
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
D +I+++ L + L + L H ++ + + D L S LD VK+W GG+
Sbjct: 293 DKTIKVWSLDN--LQCIQTLTDHSSVVMSLICW----DQFLLSCSLDNTVKIWAAIEGGN 346
Query: 458 CVLEYKDEEEE-ILRPYECMDVSCNGIVLC 544
+ Y +EE +L D ++LC
Sbjct: 347 LEVTYTHKEEHGVLALCGVHDAEAKPVLLC 376
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 33.5 bits (73), Expect = 0.19
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +2
Query: 275 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
SD I Y L+ ++ + R H + + T +V+S ++ ++ STG D +K WD R
Sbjct: 73 SDGFIRRYDLNAGTVDTIGR---HDDIS-TSIVYSYEKGEVI-STGFDEKIKFWDTRQRE 127
Query: 455 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQL 559
S V D + C+ VS N +V+C + +
Sbjct: 128 SLVFS-TDAGGAV----GCVTVSGNNLVVCVDASM 157
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 33.5 bits (73), Expect = 0.19
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +2
Query: 275 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
SD I Y L+ ++ + R H + + T +V+S ++ ++ STG D +K WD R
Sbjct: 73 SDGFIRRYDLNAGTVDTIGR---HDDIS-TSIVYSYEKGEVI-STGFDEKIKFWDTRQRE 127
Query: 455 SCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQL 559
S V D + C+ VS N +V+C + +
Sbjct: 128 SLVFS-TDAGGAV----GCVTVSGNNLVVCVDASM 157
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 359 LTQVVFSPKEDNLLYSTGLDGLVKLWDI 442
+T V F+P +DN S +DG V++WD+
Sbjct: 365 VTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 359 LTQVVFSPKEDNLLYSTGLDGLVKLWDI 442
+T V F+P +DN S +DG V++WD+
Sbjct: 365 VTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 245 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 424
T + S +D + + ++ ++ + RL G + ++ P + N+ YS G DG
Sbjct: 110 TDDRTIITSGADGQVRLGQILENGKVETKRL-GRHHGRVYKLAVLPGDPNVFYSCGEDGF 168
Query: 425 VKLWDIRAGGSCVLEY 472
V+ +DIR+ + ++ Y
Sbjct: 169 VQHFDIRSNSATMVLY 184
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 TKSLNLAISLSDNSIEIYKLSDSSLHQVC-RLHGHKEATLTQVVFSPKEDNLLYSTGLDG 421
+KS +L S D ++ ++ LS Q C ++ H + +T + F+P +D S LD
Sbjct: 522 SKSQHLLSSSMDKTVRLWNLSS----QTCLKVFSHSDY-VTCIQFNPVDDRYFISGSLDA 576
Query: 422 LVKLWDI 442
V++W I
Sbjct: 577 KVRVWSI 583
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +2
Query: 236 LDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGL 415
L +KS L S D ++ ++ + + +L H + +T + FSP ++N S L
Sbjct: 512 LSWSKSQLLLSSSMDKTVRLWDIETKTC---LKLFAHNDY-VTCIQFSPVDENYFLSGSL 567
Query: 416 DGLVKLWDIRAGGSCVLEYKDEEEEI 493
D +++W I+ V+E+ D E +
Sbjct: 568 DAKIRIWSIQ--DRHVVEWSDLHEMV 591
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
D +++++ LS+ L L GH T V SP + +L S G DG+V LWD+ G
Sbjct: 173 DKTVKVWNLSNCKLRST--LAGHTGYVST-VAVSP-DGSLCASGGKDGVVLLWDLAEG 226
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 NLAISLS-DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
N +S S D ++ ++K+ + V + + +T V F+P +N S +DG V++
Sbjct: 340 NYLLSASMDKTVRLWKVGSNDCLGVFAHNSY----VTSVQFNPVNENYFMSGSIDGKVRI 395
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
W+I G V+++ D ++ I
Sbjct: 396 WNI--SGCSVVDWADLKDII 413
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 338 HGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMD 517
+GHK+ T+ V F P S G D + LWD R G S ++ + + L C+D
Sbjct: 278 NGHKD-TVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADL---HCVD 333
Query: 518 VS--CNGIVLCTGS 553
+ N ++L TGS
Sbjct: 334 WNPHDNNLIL-TGS 346
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 275 SDNSIEIY---KLSDSSLHQ-VCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+DN++ ++ L+ + + V + GH+ A L V +SP + ++ S+ DGL+ +WD
Sbjct: 347 ADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLC-VQWSPDKSSVFGSSAEDGLLNIWD 404
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 32.7 bits (71), Expect = 0.32
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +2
Query: 257 NLAISLS-DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
N+ +S S D ++ I+ ++ +V H +T V F+ ++ +L+ S+ DGL ++
Sbjct: 126 NMIVSGSFDETVRIWDVTTGKCLKVLPAHSDP---VTAVDFN-RDGSLIVSSSYDGLCRI 181
Query: 434 WDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
WD G CV D+E P + S NG + G+
Sbjct: 182 WD-SGTGHCVKTLIDDENP---PVSFVRFSPNGKFILVGT 217
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 257 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
+ +SL D +++ + S L +H H ++ ++ + ++ NLL + D VKLW
Sbjct: 315 SFVVSLKDGTVKGFDTRASDLSPSFIIHAH-DSEVSSISYNIHAPNLLATGSADESVKLW 373
Query: 437 DI 442
D+
Sbjct: 374 DL 375
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
D +++++ L + L L GH L V SP + +L S G DG++ LWD+ G
Sbjct: 172 DKTVKVWNLQNCKLRNT--LAGHS-GYLNTVAVSP-DGSLCASGGKDGVILLWDLAEG 225
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 32.3 bits (70), Expect = 0.43
Identities = 28/97 (28%), Positives = 45/97 (46%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA S D +++++ + + + L+GH A + +V FSP +L+ S D V LWD
Sbjct: 208 LATSSVDKTVKVWDVRSYRV-PLAVLNGHGYA-VRKVKFSPHRRSLIASCSYDMSVCLWD 265
Query: 440 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTG 550
+ V Y D E + M V G++ TG
Sbjct: 266 YMVEDALVGRY-DHHTEFAVGID-MSVLVEGLMASTG 300
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
D++++++ + + + + H + + Q V++PK ++ S D +++WD+R GS
Sbjct: 128 DDTVKLWAMDRPASVRTFKEHAY---CVYQAVWNPKHGDVFASASGDCTLRIWDVREPGS 184
Query: 458 CVL 466
++
Sbjct: 185 TMI 187
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 31.9 bits (69), Expect = 0.57
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = +2
Query: 368 VVFSPKEDNLLYSTGLDGLVKLWD--IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVL 541
V FSP + ++ S G+D + +D R SC+ Y+ P+ + NG +L
Sbjct: 228 VCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCI-AYE-------APFSSLAFGDNGYIL 279
Query: 542 CTGSQLVDDDAYLVFFDQR-KPKPLGG-YWNSHTDDVTQI 655
G+ + +VF+D R KP+P+ + S+++DVT +
Sbjct: 280 VAGT----SNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSL 315
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = +2
Query: 221 SYIHRLDGTKSLNLAIS---LSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED 391
S+ LD L+ + S LS + + +L D +L H + +T V F+P ++
Sbjct: 514 SFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDY-VTCVQFNPLDE 572
Query: 392 NLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEI 493
+ S LD +++W+I V+E+ D +E +
Sbjct: 573 DYFISGSLDAKIRIWNI--SNRQVVEWNDLKEMV 604
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.9 bits (69), Expect = 0.57
Identities = 29/106 (27%), Positives = 52/106 (49%)
Frame = +2
Query: 404 STGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDAYLV 583
S+G D L ++WD+R + +L ++ +++L +D S NG L +G +D
Sbjct: 147 SSGFDSLARVWDLRTARN-ILIFQGHIKQVL----SVDFSPNGYHLASGG----EDNQCR 197
Query: 584 FFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWRSLXSGSLDGLINVY 721
+D R K L +H + V+Q+K E L + S D +N++
Sbjct: 198 IWDLRMRKLL-YIIPAHVNLVSQVKYEPQERYFLATASHDMNVNIW 242
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 320 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
+++ L GHKE +T VVFS +D L + D K+W
Sbjct: 97 NKIVVLKGHKEH-VTDVVFSSVDDECLATASTDRTEKIW 134
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 257 NLAISLSDNSIEIYKLSDSSL-----HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 421
+ +SL D +++ + + +S+ + ++GH EA T V ++ NLL + D
Sbjct: 334 SFVVSLEDGTVKGFDVRQASISASESNPSFTINGHDEAA-TSVSYNISAPNLLATGSKDR 392
Query: 422 LVKLWDI 442
VKLWD+
Sbjct: 393 TVKLWDL 399
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA D +++++ LS++ + H L + FSP LL G+ G +KLWD
Sbjct: 385 LATGSKDRTVKLWDLSNNEPSCIAT-HNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLWD 443
Query: 440 IRAGGSCVLEYKDEE 484
+ + Y E
Sbjct: 444 TLSDTNVSSRYGSRE 458
Score = 28.3 bits (60), Expect = 7.0
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Frame = +2
Query: 392 NLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGI---VLCTGSQLV 562
N+L S D VK+WD+ A G+C + + +E+ V+ N VL +GS
Sbjct: 247 NILASASADKKVKVWDV-ATGTCKITMEHHTKEV------QAVAWNHYAPEVLLSGS--- 296
Query: 563 DDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWR---SLXSGSLDG 706
D +V D R+P G W+ +D + P E SL G++ G
Sbjct: 297 -FDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKG 346
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +2
Query: 278 DNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
D +++++ L + L L GH L V SP + +L S G DG++ LWD+ G
Sbjct: 172 DKTVKVWNLQNCKLRN--SLVGHS-GYLNTVAVSP-DGSLCASGGKDGVILLWDLAEG 225
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
L +S + + I +Y S L Q + H P + + + G D L+K+WD
Sbjct: 424 LGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD 483
Query: 440 I 442
+
Sbjct: 484 L 484
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 290 EIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED-NLLYSTGLDGLVKLW 436
++ K+ D S ++ GH EA + + KE+ ++ST LDG +K W
Sbjct: 477 KLIKVWDLSGKKLFTFEGH-EAPVYSICPHQKENIQFIFSTALDGKIKAW 525
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 31.5 bits (68), Expect = 0.75
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 212 LLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKED 391
++ S R DG +L A LS ++++ + + + R H + + V P +D
Sbjct: 95 VVSSVCFRSDG--ALFAACDLS-GVVQVFDIKERMALRTLRSH----SAPARFVKYPVQD 147
Query: 392 NL-LYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
L L S G DG+VK WD+ G+ V+ ++ +R +C V N +L TGS
Sbjct: 148 KLHLVSGGDDGVVKYWDV--AGATVISDLLGHKDYVRCGDCSPV--NDSMLVTGS 198
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.1 bits (67), Expect = 0.99
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +2
Query: 254 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
L+LAI L ++ ++++ + QV L G E+ + + ++ +++L + G+DG +
Sbjct: 147 LDLAIGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAWN---NHILTTGGMDGKIVN 201
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
D+R S V Y EE+
Sbjct: 202 NDVRIRSSIVETYLGHTEEV 221
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = +2
Query: 254 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
L+LA+ L ++ ++++ + QV L G E+ + + + ++++L + G+DG +
Sbjct: 181 LDLAVGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAW---DNHILTTGGMDGKIVN 235
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
D+R S V Y EE+
Sbjct: 236 NDVRIRSSIVETYLGHTEEV 255
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 359 LTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILR 499
L+ V + ED+ ++S G+V +WD RAG S +E + + ++
Sbjct: 153 LSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRYDSIK 199
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+A + +I+++ L ++ + V L GH+ ++ V F P + S LD +K+WD
Sbjct: 74 VAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCIS-VDFHPFGE-FFASGSLDTNLKIWD 129
Query: 440 IRAGGSCVLEYK 475
IR G C+ YK
Sbjct: 130 IRKKG-CIHTYK 140
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+A + +I+++ L ++ + V L GH+ ++ V F P + S LD +K+WD
Sbjct: 74 VAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCIS-VDFHPFGE-FFASGSLDTNLKIWD 129
Query: 440 IRAGGSCVLEYK 475
IR G C+ YK
Sbjct: 130 IRKKG-CIHTYK 140
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = +2
Query: 137 DTVEPEELEQMFSKKYKI----VTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKL 304
D ++L+ + KK+ T H SL+ S + L+ T +S+ DN I Y
Sbjct: 52 DIANAKQLKITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRY-- 109
Query: 305 SDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIR 445
GHK+ ++ + SP D+ + S LD V+LWD+R
Sbjct: 110 ----------FKGHKDRVVS-LCMSPINDSFM-SGSLDRSVRLWDLR 144
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +2
Query: 239 DGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLD 418
D ++ L +A + +I+++ L ++ + V L GH+ + V F P + S LD
Sbjct: 161 DASEGL-VAAGAASGTIKLWDLEEAKV--VRTLTGHR-SNCVSVNFHPFGE-FFASGSLD 215
Query: 419 GLVKLWDIRAGGSCVLEYK 475
+K+WDIR G C+ YK
Sbjct: 216 TNLKIWDIRKKG-CIHTYK 233
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = +2
Query: 257 NLAISLSDNSIEIYKL------SDSSLHQVCRLHGH-KEATLTQVVFSPKEDNLLYSTGL 415
+ +SL D +++ + + SDS L+ + H ++ ++ + ++ NLL + +
Sbjct: 366 SFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSM 425
Query: 416 DGLVKLWDIRAG-GSCVLEYK 475
D VKLWD+ SC+ ++
Sbjct: 426 DKSVKLWDLSNNEPSCIATHQ 446
Score = 29.5 bits (63), Expect = 3.0
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Frame = +2
Query: 344 HKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVS 523
H E+ L + ++ + N+L S D VK+WD+ A G+C + + +E+ V+
Sbjct: 264 HTESVLG-LAWNKEFRNILASASADKKVKVWDV-ATGTCKITMEHHTKEV------QAVA 315
Query: 524 CNGI---VLCTGSQLVDDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIKSPRLEWR---SL 685
N VL +GS D +V D R+P G W+ +D + P E SL
Sbjct: 316 WNHYAPEVLLSGS----FDQTVVMKDGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVVSL 371
Query: 686 XSGSLDG 706
G++ G
Sbjct: 372 EDGTVKG 378
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +2
Query: 209 SLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKE 388
SL+ HR++G LA D I +Y + +L V GH + +T + FS ++
Sbjct: 517 SLVKIVYHRVNGL----LATVADDFVIRLYDVV--TLKMVREFRGHTDR-ITDLCFS-ED 568
Query: 389 DNLLYSTGLDGLVKLWDI 442
+ S+ +DG +++WD+
Sbjct: 569 GKWVISSSMDGSLRIWDV 586
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.7 bits (66), Expect = 1.3
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 6/151 (3%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDS--SLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
+A + D SI+I+ L S + H + +T V FS + +L S DG +K+
Sbjct: 342 IAGGVGDGSIQIWSLKPGWGSRPDIYVGKAHTD-DITSVKFS-SDGRILLSRSFDGSLKV 399
Query: 434 WDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDD---AYLVFFDQRKP 604
WD+R + + E P + S + ++ TG+ + D L F+D+ K
Sbjct: 400 WDLRQMKEALKVF--EGLPNYYPQTNVAFSPDEQIILTGTSVEKDSTTGGLLCFYDRTKL 457
Query: 605 KPLGGYWNSHTDDVTQIK-SPRLEWRSLXSG 694
+ + S T V Q PRL SG
Sbjct: 458 EIVQKVGISPTSSVVQCAWHPRLNQIFATSG 488
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 335 LHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDI 442
L GH +A +T + +S +LL S GLDG V +W++
Sbjct: 156 LTGHTKA-VTAIDWSTSHVHLLASAGLDGAVYVWNV 190
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 347 KEATLTQVV-FSPKEDNLLYSTGLDGLVKLWDIRA 448
KE + VV F P N+ S G G ++LWDIRA
Sbjct: 244 KEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRA 278
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
L + D +I+++ + ++ V L GH T+ + P +LL S DG LWD
Sbjct: 143 LLTASGDQTIKVWDVEENKCTGV--LIGHT-GTVKSMCSHPTNSDLLVSGSRDGCFALWD 199
Query: 440 IRAGGS 457
+R S
Sbjct: 200 LRCKSS 205
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 185 KIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQ-VCRLHGHKEATL 361
KI T H+ +H + G + +A + SD +I+I +S+S Q + L GH+ +
Sbjct: 5 KIETGHS-DTIHDVVMDYYGKR---VATASSDCTIKITGVSNSGGSQHLATLTGHR-GPV 59
Query: 362 TQVVFS-PKEDNLLYSTGLDGLVKLW 436
QV ++ PK +LL S DG + LW
Sbjct: 60 WQVAWAHPKFGSLLASCSYDGQIILW 85
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.3 bits (65), Expect = 1.7
Identities = 33/156 (21%), Positives = 62/156 (39%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA DN ++++ + + H + +T + F +LL S LDG V+ WD
Sbjct: 364 LATGADDNKVKVWNVMSGTCFITFTEHTN---AVTALHFMADNHSLL-SASLDGTVRAWD 419
Query: 440 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGG 619
+ YK R + + +G V+C G+ D++ +F +K +
Sbjct: 420 FKR----YKNYKTYTTPTPRQFVSLTADPSGDVVCAGTL----DSFEIFVWSKKTGQIKD 471
Query: 620 YWNSHTDDVTQIKSPRLEWRSLXSGSLDGLINVYXI 727
+ H V + L + L S S D + ++ +
Sbjct: 472 ILSGHEAPVHGLMFSPLT-QLLASSSWDYTVRLWDV 506
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.3 bits (65), Expect = 1.7
Identities = 33/156 (21%), Positives = 62/156 (39%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA DN ++++ + + H + +T + F +LL S LDG V+ WD
Sbjct: 404 LATGADDNKVKVWNVMSGTCFITFTEHTN---AVTALHFMADNHSLL-SASLDGTVRAWD 459
Query: 440 IRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGG 619
+ YK R + + +G V+C G+ D++ +F +K +
Sbjct: 460 FKR----YKNYKTYTTPTPRQFVSLTADPSGDVVCAGTL----DSFEIFVWSKKTGQIKD 511
Query: 620 YWNSHTDDVTQIKSPRLEWRSLXSGSLDGLINVYXI 727
+ H V + L + L S S D + ++ +
Sbjct: 512 ILSGHEAPVHGLMFSPLT-QLLASSSWDYTVRLWDV 546
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 320 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
H ++ + L ++ P + L ++ LDG+V LW ++ G
Sbjct: 186 HTSNQISSQHKRKLRSLILCPVNEQLFATSSLDGMVSLWQLQPG 229
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 320 HQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVL--EYKDEEEEI 493
H + + + + + S +LL+S G DG + +W+ GG V+ + E +
Sbjct: 249 HSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESV 308
Query: 494 LRPYECMDVSCNG 532
L D+ C+G
Sbjct: 309 LCLAVVSDILCSG 321
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 317 LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCV 463
L V L GH + + + P+ + L+S +DG +++WD + G CV
Sbjct: 121 LAMVASLEGHNKEL--KGIALPEGSDKLFSVSIDGTLRVWDCNS-GQCV 166
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 227 IHRLDGTKSLNLAISLSDNSIEIYKLSDSS---LHQVCRLHGHKEATLTQVVFSPKEDNL 397
+H + + A S SI ++K +DS + L GH +T V + +
Sbjct: 269 VHAMTAANGMLFA-GTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGE---V 324
Query: 398 LYSTGLDGLVKLWDI 442
LYS +D +K+WD+
Sbjct: 325 LYSGSVDKTIKVWDL 339
>At4g23890.1 68417.m03436 expressed protein hypothetical protein,
Synechocystis sp., PIR:S76577
Length = 250
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 HKEATLTQVVFSP-KEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYE 508
H+ +T+ + VF P K+ + LY G LW++ G K E+E+ R E
Sbjct: 25 HQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRGLCNGEKGIEKELQRNIE 80
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRL--HGHKEATLTQVVF--SPK---EDNLLYSTGLD 418
+A + D S+EI+ +S ++ C+L HG + ++ + + SP L+S+ +D
Sbjct: 28 VAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPNSRISSLAWCCSPSIGLPSGRLFSSSID 87
Query: 419 GLVKLWDI 442
G + WD+
Sbjct: 88 GSISEWDL 95
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
LA + D + +Y++S+ R V +SP + ++S DGL++ WD
Sbjct: 168 LAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTWSP-DAKRIFSGSSDGLIRCWD 226
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = +2
Query: 224 YIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLY 403
+++RL+ T ++ + I ++ L + H R + V F +++Y
Sbjct: 42 HVNRLELTPEKGKLVAACNPHIRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQ-YTGHMMY 100
Query: 404 STGLDGLVKLWDIRAGGSCVLEYK 475
S DG VK+WD+R C E++
Sbjct: 101 SGSEDGSVKIWDLRV-RECQREFR 123
>At2g19230.1 68415.m02245 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 877
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 293 IYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLV--KLWDIRAGGSCVL 466
IY L +H VC + + V+ N +Y T D L+ + WD+ A G
Sbjct: 152 IYTLRSDKVH-VCLVDKERGTPFLSVLELRLLKNNIYETASDSLMLYRRWDLGATGDLPA 210
Query: 467 EYKDE 481
YKD+
Sbjct: 211 RYKDD 215
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/107 (25%), Positives = 50/107 (46%)
Frame = +2
Query: 143 VEPEELEQMFSKKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLH 322
VE E L+ + +K +V ++ ++ DG LA + D++++I
Sbjct: 84 VEAESLQHLSAKYCPLVPPPRSTIAAAFSS--DGR---TLASTHGDHTVKIIDCETGKCL 138
Query: 323 QVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCV 463
++ L GH+ T V F P+ ++ S LD V+LW+ + G C+
Sbjct: 139 KI--LTGHRR-TPWVVRFHPRHSEIVASGSLDHEVRLWNAKT-GECI 181
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/107 (25%), Positives = 50/107 (46%)
Frame = +2
Query: 143 VEPEELEQMFSKKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLH 322
VE E L+ + +K +V ++ ++ DG LA + D++++I
Sbjct: 84 VEAESLQHLSAKYCPLVPPPRSTIAAAFSS--DGR---TLASTHGDHTVKIIDCETGKCL 138
Query: 323 QVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCV 463
++ L GH+ T V F P+ ++ S LD V+LW+ + G C+
Sbjct: 139 KI--LTGHRR-TPWVVRFHPRHSEIVASGSLDHEVRLWNAKT-GECI 181
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 374 FSPKEDNLLYSTGLDGLVKLWDIRAGGSCVL 466
FSP D+++YS DG + D+ G S L
Sbjct: 223 FSPTNDDMVYSASSDGTIGYTDLETGTSSTL 253
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = +2
Query: 254 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
L+LA+ L ++ ++++ + QV L G E+ + + ++ +++L + G+DG +
Sbjct: 178 LDLAVGLDNSEVQLWDFVSN--RQVRTLIGGHESRVGSLAWN---NHILTTGGMDGKIVN 232
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
D+R S V Y EE+
Sbjct: 233 NDVRIRSSIVGTYLGHTEEV 252
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 275 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIR 445
SD+SI +Y L + + R H T V F+ + NL+ S D L K+WD R
Sbjct: 249 SDDSIYVYDLEANRVS--LRTVAHTSDVNT-VCFADESGNLILSGSDDNLCKVWDRR 302
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 350 EATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGS 457
E + + F+P+ +++ ++ DG LWD+R+ G+
Sbjct: 348 ERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGA 383
>At5g37560.1 68418.m04523 zinc finger protein-related contains weak
similarity to zinc fingers and Pfam:PF01485 IBR domain
Length = 408
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 317 LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEIL 496
L +V RL G +T T V+ + ++DN +D LVK + + K + E +L
Sbjct: 120 LEEVQRLRGRLASTGT-VLVATRDDNFALRLAIDALVKATQEKPLTCSICSDKTDAEHML 178
Query: 497 RPYECMDVSC 526
+C+ C
Sbjct: 179 LNDKCLHRHC 188
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 245 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 424
+K+ L + DNS+ ++++ + H +T V F+P +D+ S +DG
Sbjct: 365 SKNNRLLSASVDNSVRLWQIG---CEDCLGIFSHNNY-VTSVQFNPVDDDHFISGSIDGK 420
Query: 425 VKLW 436
V++W
Sbjct: 421 VRIW 424
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 245 TKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGL 424
+K+ L + DNS+ ++++ + H +T V F+P +D+ S +DG
Sbjct: 365 SKNNRLLSASVDNSVRLWQIG---CEDCLGIFSHNNY-VTSVQFNPVDDDHFISGSIDGK 420
Query: 425 VKLW 436
V++W
Sbjct: 421 VRIW 424
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 242 GTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 421
G K +A D+ + I+ S L + L GH A + V +SP ++L S DG
Sbjct: 498 GYKQAFIASGSEDSQVYIWHRSTGKL--IVELPGHAGA-VNCVSWSPTNLHMLASASDDG 554
Query: 422 LVKLWDI 442
+++W +
Sbjct: 555 TIRIWGL 561
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 392 NLLYSTGLDGLVKLWDIRAG 451
N L S+ DG+VKLWD+ G
Sbjct: 767 NYLASSDYDGIVKLWDVTTG 786
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+ L SI + ++ ++L + R H + +T + F ++ +LL S LDG V +W
Sbjct: 195 ICYGLKGGSIRVLNIN-TALRSLFRGHSQR---VTDMAFFAEDVHLLASVSLDGKVFVWK 250
Query: 440 IRAG 451
I G
Sbjct: 251 ISEG 254
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 359 LTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
+T V FS D + ++ G+D VK+WD+R G
Sbjct: 183 ITAVSFSDAADKI-FTGGVDNDVKVWDLRKG 212
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSS-LHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
+A + SD +I+I +S++ Q+ L GH+ PK ++L S DG V LW
Sbjct: 26 IATASSDCTIKITGVSNNGGSQQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILW 85
>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose:salicylic acid
glucosyltransferase [Nicotiana tabacum] GI:7385017;
contains Pfam profiles PF00201: UDP-glucoronosyl and
UDP-glucosyl transferase, PF01535: PPR repeat
Length = 1184
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 272 LSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAG 451
L NS IY L ++C+L +EA + D ++Y+T +DG K DIRA
Sbjct: 755 LKPNSY-IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAA 813
Query: 452 GSCVLE 469
E
Sbjct: 814 SKFFYE 819
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/80 (25%), Positives = 43/80 (53%)
Frame = +2
Query: 254 LNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKL 433
L+LA+ L ++ ++++ S+ H V L G E+ + + ++ +++L + G+DG +
Sbjct: 165 LDLAVGLDNSEVQVWDCV-SNRH-VRTLRGGHESRVGSLAWN---NHILTTGGMDGKIVN 219
Query: 434 WDIRAGGSCVLEYKDEEEEI 493
D+R S + Y EE+
Sbjct: 220 NDVRIRSSIIGTYVGHTEEV 239
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 281 NSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLL---YSTGLDGLVKLWDIRA 448
N++ +Y ++ ++ L H A +T V+ P D + +++ LDG +++W+ A
Sbjct: 28 NTVSVYSVATGL--KITSLEDHT-APVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSA 83
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/90 (16%), Positives = 45/90 (50%)
Frame = +2
Query: 176 KKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEA 355
K +++++ + +LHS +N + ++S++ + L + +++ + A
Sbjct: 155 KSAEVLSKDSAGMLHSLSGGAWDPHDVNAVAATGESSVQFW-----DLRTMKKVNSIEHA 209
Query: 356 TLTQVVFSPKEDNLLYSTGLDGLVKLWDIR 445
+ V ++PK +++L + + + +WD+R
Sbjct: 210 HVRGVDYNPKREHILVTAEDESGIHVWDLR 239
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 7.0
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = +2
Query: 239 DGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDN-----LLY 403
D T SL LA D++ +I+ + S+ R H + T+ P +N L
Sbjct: 457 DPTGSL-LASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLA 515
Query: 404 STGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGS 553
S D VKLWD G + + E P + S NG + +GS
Sbjct: 516 SASFDSTVKLWDAEL-GKMLCSFNGHRE----PVYSLAFSPNGEYIASGS 560
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 242 GTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDG 421
G S +A D+ + I+ L ++ +V L GH T+ V ++PK +L S D
Sbjct: 452 GLDSSFIASGSEDSQVYIWNLKNTKPLEV--LSGHS-MTVNCVSWNPKNPRMLASASDDQ 508
Query: 422 LVKLW 436
+++W
Sbjct: 509 TIRIW 513
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSD-SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
+ ++ + + I++Y S + L Q + H A +P + + G D L+K+W
Sbjct: 422 IGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVW 481
Query: 437 DI 442
D+
Sbjct: 482 DV 483
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWD 439
+A S ++ L ++ R H + +T++V +P E +LL S+ LD +++WD
Sbjct: 427 IAAGFSSGQCRLFDLRENGFISSWRAH---DGYVTKLV-AP-ESHLLVSSSLDKTLRIWD 481
Query: 440 IR 445
+R
Sbjct: 482 LR 483
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 275 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
S N + ++ D + +Q+ E + + +S + LL S DG VKLW I G
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 610
Query: 455 S 457
S
Sbjct: 611 S 611
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 275 SDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGG 454
S N + ++ D + +Q+ E + + +S + LL S DG VKLW I G
Sbjct: 551 SSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 610
Query: 455 S 457
S
Sbjct: 611 S 611
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/79 (20%), Positives = 44/79 (55%)
Frame = +2
Query: 257 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
++A+ L+++ ++++ +S Q+ L G ++ + + ++ +++L + G+DGL+
Sbjct: 196 HVAVGLNNSEVQLW--DSASNRQLRTLKGGHQSRVGSLAWN---NHILTTGGMDGLIINN 250
Query: 437 DIRAGGSCVLEYKDEEEEI 493
D+R V Y+ +E+
Sbjct: 251 DVRIRSPIVETYRGHTQEV 269
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/79 (20%), Positives = 44/79 (55%)
Frame = +2
Query: 257 NLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLW 436
++A+ L+++ ++++ +S Q+ L G ++ + + ++ +++L + G+DGL+
Sbjct: 186 HVAVGLNNSEVQLW--DSASNRQLRTLKGGHQSRVGSLAWN---NHILTTGGMDGLIINN 240
Query: 437 DIRAGGSCVLEYKDEEEEI 493
D+R V Y+ +E+
Sbjct: 241 DVRIRSPIVETYRGHTQEV 259
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +2
Query: 260 LAISLSDNSIEIYKLS--DS----SLHQVCRLHGHKEATLTQVVFSPKEDN-LLYSTGLD 418
+A DN+I ++ S DS S + + + + E + V +SP E N LL S D
Sbjct: 281 IASGAGDNAIRLFVDSKHDSVDGPSYNLLLKKNKAHENDVNSVQWSPGEGNRLLASASDD 340
Query: 419 GLVKLWDI 442
G+VK+W +
Sbjct: 341 GMVKIWQL 348
>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 851
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +2
Query: 311 SSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEE 490
++L ++ L ++ ++ K+ +L +G G+ + + G + LEY DE+E
Sbjct: 147 NNLGEITLLGQNRMKWFAYLLSMSKDGSLALGSGWKGICEANGVNTGEAFTLEYIDEQET 206
Query: 491 ILRPYECM 514
+ +C+
Sbjct: 207 AHKTSQCV 214
>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 638 DDVTQIKSPRLEWRSLXSGSLDGLINVYXIXXEXEEDALLYSLN 769
D V R EW G I V I E+AL+YSLN
Sbjct: 155 DRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLN 198
>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 638 DDVTQIKSPRLEWRSLXSGSLDGLINVYXIXXEXEEDALLYSLN 769
D V R EW G I V I E+AL+YSLN
Sbjct: 155 DRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLN 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,603
Number of Sequences: 28952
Number of extensions: 371266
Number of successful extensions: 1261
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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