Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K07
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.33 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    24   1.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +2

Query: 362  WTTATLPVTSETTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISS 541
            WTT      S TT S    +   +  +    T+  ++TRP  ++ PT   TI     +  
Sbjct: 1035 WTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPP-AVVM 1093

Query: 542  VSLVKRAYTMEPGTNCP 592
              + K +   EPG   P
Sbjct: 1094 PEVDKPSQPCEPGQYVP 1110


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +2

Query: 383 VTSETTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSVSLVKRA 562
           V + T    +L      ++  +   S     RP     P ++   +    ISS+S VK  
Sbjct: 26  VDAATGGGSVLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMD 85

Query: 563 YTME 574
           +T++
Sbjct: 86  FTLD 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,321
Number of Sequences: 336
Number of extensions: 2807
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)