Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K07
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    28   1.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   5.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   7.7  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   7.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   7.7  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 RCRL*CNWK-CRCRPQTRXGILLGI-CFPLLWPLLTSANCSFTL 278
           RCR+ CNW+  RCR     G   G+ C  L+  +L S +   T+
Sbjct: 252 RCRVECNWRHGRCRQVVLSGHSDGVMCLQLVRNILASGSYDATI 295


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
 Frame = +2

Query: 329 ANTQQDPRSCLWTTATLPVTSETT---ASKLLPSARGQSLSGALQTSPGSSTRPKDSSLP 499
           +++   P+S L T++ +     +T    S  +PS    + S ++ +SP +S     SS+P
Sbjct: 487 SSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIP 546

Query: 500 T----DILTILTTFK--ISSVSL 550
           T    D  + +TT    ISS S+
Sbjct: 547 TSSSSDFSSSITTISSGISSSSI 569


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 518 LTTFKISSVSLVKRAYTMEPGTNCPQ 595
           LT+++I + ++V     ++P T CPQ
Sbjct: 245 LTSYEIDTHNIVVNQLLLDPNTTCPQ 270


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 598 LRTQTEFXTXRVFADASXSTITCXTWXR 681
           LR Q  F   R F+D+S S ++C ++ +
Sbjct: 174 LRGQDSFRRLRTFSDSSLSPVSCSSFPK 201


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 397 DSVKTVTISTGPITKRCAADVARIVNASEGLVVAYGYSDNSDDIQNL 537
           DS +  T   G I      +V RI+N      +AYG    SD  +N+
Sbjct: 154 DSQRAATKDAGAIA---GLNVLRIINEPTAAAIAYGLDAKSDKPKNV 197


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 329  ANTQQDPRSCLWTTATLPVTSETTASKLLPSARGQSLSGALQTSPGSS 472
            +N ++   S    T T PVTS+ TASK          S A +   G S
Sbjct: 1707 SNPEKTDESTSSVTETKPVTSKPTASKADVGQNATEASSAKREPSGKS 1754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,028
Number of Sequences: 5004
Number of extensions: 47124
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)