Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K07
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/60 (21%), Positives = 24/60 (40%)
 Frame = +2

Query: 395 TTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSVSLVKRAYTME 574
           T    +L      ++  +   S     RP     P ++   +    ISS+S VK  +T++
Sbjct: 1   TGGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLD 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 219 YWGEGKVTNLGKIRGFPQSYNVNEQFALVSKGHNKG 326
           Y+ EG   + GK RGF    N N+ +++  K  N G
Sbjct: 19  YFDEGG-RSYGKGRGFIIQNNNNDDWSVGKKNSNSG 53


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 216 DYWGEGKVTNLGKIRGFPQSYNV 284
           D WG+     + K  G P S NV
Sbjct: 68  DQWGDKTFVIIMKFNGVPSSLNV 90


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 421 STGPITKRCAADVARIVNASEGLVVAYGYSDNSD 522
           +T PIT RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 368 TATLPVTSETTASKLLPSARGQSLSGALQTSPGSSTRP 481
           T TLP  S T      PSA   + +     + G++T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 332 LLSLIVALTDERKLFVYIVA 273
           LLSL+ A T   KL V+IVA
Sbjct: 63  LLSLVCADTRLNKLAVFIVA 82


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = +2

Query: 395 TTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSVSLVKRAYTME 574
           T    +L      ++  +   S     RP     P ++   +    ISSVS V   +T++
Sbjct: 1   TGGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLD 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,941
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)