Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K07
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    29   3.9  
At1g61340.1 68414.m06913 F-box family protein contains Pfam PF00...    29   3.9  
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)...    28   6.8  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    28   6.8  

>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = +2

Query: 365 TTATLPVTSETTASKLLPSARGQSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSV 544
           T++T P     TAS     + G S +     S GSS  P  SS    + +I TT   SS 
Sbjct: 346 TSSTTPSAPPQTASSSSSFSFGTSANSGFNLSTGSSAAPA-SSTSGAVFSIATTTTTSSS 404

Query: 545 SLVKRAYTMEPGTNCP 592
           +    A T  P ++ P
Sbjct: 405 T---PAATSAPASSAP 417


>At1g61340.1 68414.m06913 F-box family protein contains Pfam
           PF00646: F-box domain; similar to late embryogenesis
           abundant protein GI:1350540 from [Picea glauca]
          Length = 185

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 344 PVGYLLSLIVALTDE--RKLFVYIVALREASYLAKVSHFSFS 225
           P+  L+ +I  +  E  ++LF     +REA+ +AK SHF++S
Sbjct: 85  PLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYS 126


>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 352

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 431 QSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSVSLVKRAYTMEPGTNCPQT 598
           Q+L  AL     SST    SSLPT ++T       SS +L+ R Y  +P ++   T
Sbjct: 162 QALCEALSLDKPSSTLSSSSSLPTPVITQQNIRNFSS-ALLDRCY--DPSSSSSST 214


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 431 QSLSGALQTSPGSSTRPKDSSLPTDILTILTTFKISSVSLVKRAYTMEPGTNCPQT 598
           Q+L  AL     SST    SSLPT ++T       SS +L+ R Y  +P ++   T
Sbjct: 161 QALCEALSLDKPSSTLSSSSSLPTPVITQQNIRNFSS-ALLDRCY--DPSSSSSST 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,992
Number of Sequences: 28952
Number of extensions: 263589
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)