Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    30   0.49 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   2.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   7.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   7.9  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 314 HLEYHEGERRGIDTNSPGALASRESSLGGDQDVRVA 421
           H++ HE  +  ++T +PG ++S  + L  DQ   V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 371 LASRESSLGGDQDVRVAGLPG 433
           LA++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +3

Query: 198  QGRDPDLEAREHEAREYM-----LHLDKTTGLRKNRASLAEWEYTSNITKENEEESIQTH 362
            Q R   L A E + R+ +     LH DK    +  +A+  E  Y   + KE      Q +
Sbjct: 1034 QKRTVLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHE-RYHKRMQKEE-----QAY 1087

Query: 363  LELSRQEKAAW 395
            +E  R+EKA W
Sbjct: 1088 IEKKREEKAEW 1098


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 624 STSQDPEGVEACLGGVAQRGR 686
           ST  D    EACLG + +RGR
Sbjct: 872 STRLDASDFEACLGALERRGR 892


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 291 ASLAEWEYTSNITKENEEESIQTHLELSRQEKAAWEETKMYGWQD 425
           +SL+ W      +KE ++ ++ +++++SR    A     ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,127
Number of Sequences: 5004
Number of extensions: 58166
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)