Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0213 + 20974712-20975413                                         33   0.39 
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    31   1.2  
10_01_0065 + 845447-846187,846969-847193                               29   6.3  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    28   8.3  
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469...    28   8.3  
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    28   8.3  

>02_04_0213 + 20974712-20975413
          Length = 233

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 324 ITKENEEESIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALP 491
           + +E EEE +    E  R  +A  EE     W+DF D  L ++ ++  Q   A  P
Sbjct: 73  VDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELLLQLRRRQQQRAAAGTP 128


>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
            13166756-13170655
          Length = 1415

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 678  VVPLHPGMLQ-LLQGLGSWRIFQLSQAPKIDRIYFHSCTS 562
            V  +H  +L  LL  L S  IF +S +P++  +  HSCTS
Sbjct: 1179 VTHVHNELLPFLLSNLTSLSIFAISNSPELTSLVLHSCTS 1218


>10_01_0065 + 845447-846187,846969-847193
          Length = 321

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 500 IPSFDENCVWNGIELCH 550
           +PSFD   VW G+E CH
Sbjct: 138 LPSFDMEGVWRGMEECH 154


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 432 PGSPATRTSWSPP--RLLSLDARAPGEFVSIPL--RSPS*YSRCTPIRLSW 292
           PGSP  R S SPP  RL S    +P      P+  RSP    R TP R  W
Sbjct: 308 PGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRRMW 358


>04_04_0154 -
           23146445-23146535,23146689-23146795,23146933-23146993,
           23147070-23147221,23147306-23147383,23147696-23147809,
           23147880-23147956,23148128-23148194,23148341-23148406,
           23148528-23148651,23148733-23148825,23149446-23149594,
           23149681-23149761,23150502-23150644,23150758-23150872
          Length = 505

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 675 VPLHPGMLQLLQGLGSWRIFQLSQAPKIDRIYFHSCT 565
           + L PG+L ++ GLG+     L+  P +D+I F   T
Sbjct: 206 IGLPPGVLNIITGLGTEAGAPLASHPHVDKIAFTGST 242


>03_02_0124 -
           5749183-5749773,5750628-5751160,5751191-5753035,
           5753632-5753820,5753911-5754013,5754087-5754269,
           5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 207 DPDLEAREHEAREYMLHLDKTTGLRKN--RASLAEWEYTSNITKENEEESIQT 359
           DP +E      R  ++ +DK+  +  N  R +LA    +S+ITK +++ES+ +
Sbjct: 511 DPSVEGYSRGRRTGVVEMDKSLKVDYNSRRNNLAPEVSSSHITKSSQDESVSS 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,804,573
Number of Sequences: 37544
Number of extensions: 414119
Number of successful extensions: 1210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)