Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)                  35   0.098
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     29   3.7  
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   29   3.7  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               29   4.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   4.9  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  28   8.5  

>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
 Frame = +3

Query: 288 RASLAEWEYTSNITKENEEESIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 467
           ++S A W Y +N+T EN  +  Q  L  S   + A ++ K +      + T RR  K  +
Sbjct: 45  KSSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKFDLTKLSNDT-RRQIKMVT 103

Query: 468 QLGVAALPDGKFQALMRTVSG-MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPE 644
           +   A+  D   Q  +  V G M+  Y + K+    + SK  LSL+P + +I S S+D E
Sbjct: 104 E--TASSSDKDVQKTLNDVEGKMDQIYGSGKVID-TDGSK--LSLDPHLYKILSNSRDYE 158



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +2

Query: 662 GWSGTTRPARQRRXTSPDYVNLYNEAAKLNGSXTVXEWWQSXYXVXDFXXXXAXLWXDVK 841
           GW   T P  + R     +V L N+ AK NG     EWW+S Y + +       L+ D++
Sbjct: 166 GWRDATGP--ELRPLYKQFVELANKGAKENGWADNGEWWRSWYEIDNLESSVEALYEDLR 223

Query: 842 PLXXXL 859
           PL   L
Sbjct: 224 PLYEEL 229


>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
          Length = 200

 Score = 34.7 bits (76), Expect = 0.098
 Identities = 29/139 (20%), Positives = 55/139 (39%)
 Frame = +3

Query: 228 EHEAREYMLHLDKTTGLRKNRASLAEWEYTSNITKENEEESIQTHLELSRQEKAAWEETK 407
           E  A+ ++   ++        + LA W Y +N+T  N+    Q  L  S   ++A     
Sbjct: 26  ERNAKAFLDEHNRRAPFEYRNSELALWNYETNLTDFNQALKTQASLAFSMFTQSALVNAS 85

Query: 408 MYGWQDFQDFTLRRMFKKYSQLGVAALPDGKFQALMRTVSGMESNYATAKICSYKNESKC 587
            +      + T R++  K      +       +      S M+  Y++ K+     E   
Sbjct: 86  KFDANKLSEDTKRQI--KLIAASASPKNPADIKRKSELNSQMDKIYSSGKVKDANGEM-- 141

Query: 588 DLSLEPEITEIFSTSQDPE 644
            LSL P++ +I + S+D E
Sbjct: 142 -LSLNPDLYKILAESRDYE 159


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 662 GWSGTTRPARQRRXTSPDYVNLYNEAAKLNGSXTVXEWWQSXYXVX-DFXXXXAXLWXDV 838
           GW     P    R      V+L N+ A+ +G      + +  Y +  DF      LW DV
Sbjct: 304 GWRDAVAPPV--RGMFQQMVDLLNKGARQHGLGDYGHFERGEYEMGNDFTAVIKKLWTDV 361

Query: 839 KPLXXXL 859
           KPL   L
Sbjct: 362 KPLYKEL 368



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 510 LMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPE 644
           L   ++ M   Y+T K+C     +   +SL+P++  + S S++ +
Sbjct: 252 LQSLITNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQD 296


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 662 GWSGTTRPARQRRXTSPDYVNLYNEAAKLNGSXTVXEWWQSXYXVX-DFXXXXAXLWXDV 838
           GW     P    R      V+L N+ A+ +G      + +  Y +  DF      LW DV
Sbjct: 588 GWRDAVAPPV--RGMFQQMVDLLNKGARQHGLGDYGHFERGEYEMGNDFTAVIKKLWTDV 645

Query: 839 KPLXXXL 859
           KPL   L
Sbjct: 646 KPLYKEL 652



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 510 LMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPE 644
           L   ++ M   Y+T K+C     +   +SL+P++  + S S++ +
Sbjct: 536 LQSLITNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQD 580


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +3

Query: 333  ENEEESIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDGKFQAL 512
            E E E  Q HLE+  QEK A ++TK    +D   FT     K+   L   +  + K   +
Sbjct: 876  EGEYEKQQQHLEVLEQEKVALQQTKE---EDSMKFTK----KEKELLTALSCTEAKLHEI 928

Query: 513  MRTVSGMESNY 545
              TV   E  +
Sbjct: 929  QSTVEEREREF 939


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 450 MFKKYSQLGVAALPDGKFQALMRTVSGMES 539
           ++K   QLG ++   G+ QA+MR +SGM S
Sbjct: 513 VYKALGQLGFSSFRAGQEQAVMRILSGMSS 542


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216  LEAREHEAREYMLHLDKTTGLRKNRASLAEWEYTSNITK-ENEEESIQTHLELSRQEKAA 392
            L+  + + +  +  L KT    +  A  A    T  + K +++  S+Q+ LEL  +EK +
Sbjct: 4281 LQQEKDDLKSKLDQLKKTLQKSEANAEEALQRRTDELEKLQSQTRSLQSQLELIEKEKES 4340

Query: 393  WE 398
            WE
Sbjct: 4341 WE 4342


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 664  PRHASTPSGSWLVENISVISGSKDRSHLLSFLY 566
            P    +PS  ++  N+  +S +KD  HL  +LY
Sbjct: 957  PDSPLSPSNDYININVPTVSSNKDYMHLFMYLY 989


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 561 CSYKNESKCDLSLEPEITEIFSTSQD 638
           CS K+ S CDL  +P+ + +  TSQ+
Sbjct: 179 CSDKDTSACDLRTKPQSSTVCGTSQE 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,517,509
Number of Sequences: 59808
Number of extensions: 450603
Number of successful extensions: 1306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)