Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arre...    29   3.2  
D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C prot...    29   3.2  
D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C prot...    29   3.2  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    29   4.3  
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U88165-10|AAK21395.1|  161|Caenorhabditis elegans Paralysed arrest
           at two-fold protein10 protein.
          Length = 161

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 408 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDGKFQALMRTVS 527
           M+G  QDF + TLR++ +K+   G   L   +F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>D45896-1|BAA82524.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 408 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDGKFQALMRTVS 527
           M+G  QDF + TLR++ +K+   G   L   +F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>D45895-1|BAA82523.1|  161|Caenorhabditis elegans troponin C
           protein.
          Length = 161

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 408 MYGW-QDFQDFTLRRMFKKYSQLGVAALPDGKFQALMRTVS 527
           M+G  QDF + TLR++ +K+   G   L   +F AL+ TV+
Sbjct: 44  MHGMEQDFDEKTLRKLIRKFDADGSGKLEFDEFCALVYTVA 84


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 330 KENEEESIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYS 467
           +ENE   ++T + LS   +   E  + Y    FQ  T+RR+  +Y+
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYT 272


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +3

Query: 228 EHEAREYMLHLDKTTGLRKNRASLAEWEYTSNITKENEEESIQTHLELSRQEKAAWEETK 407
           E + +E ++  DKT GL KN+      ++ + +  EN+  +  T ++L RQ++AA ++ K
Sbjct: 13  EQKRKEKVIE-DKTFGL-KNKKGNKNQKFVAQV--ENQVRNNNTRMDLVRQQEAAKKKEK 68


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
            C09G1.2 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261  DKTTGLRKNRASLAEWEYTSNITKENEEESIQTHLELSRQEKAAWEETKMYGWQDFQDFT 440
            D  T    ++ S +  E       + +EE+ +  L L + E+A+ E+T +   +DF  FT
Sbjct: 863  DYPTATDTDQRSSSCSELKGTTMNKKQEENTRKRLSL-KNEEASPEKTLVRAEKDFNHFT 921

Query: 441  LRRMFKKYS-QLGVAALP 491
            +++  +  S   G  ALP
Sbjct: 922  VKKKEECLSLSFGFIALP 939


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 216 LEAREHEAREYMLHLDKTTGLRKNRASLAEWE---YTSNITKENEEESIQTHLELSRQE 383
           LEA ++   +  L+LD+T  L K R    +W    +    T+ +  ES+   LE S++E
Sbjct: 368 LEANDYYDEDDDLYLDRTGQLEKQREKRKQWAEEGFGHKRTETDTYESLCRKLEESKKE 426


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 450 MFKKYSQLGVAALPDGKFQALMRTVSGMESNYATAKICSYKNESKCDLS 596
           ++K+ SQ+ V    + K +  +R +    S+ A++  CSYK + K D S
Sbjct: 304 VYKEGSQIAVLCSENSKRRPSIRLIDLKNSHKASSTFCSYK-DRKIDFS 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,212
Number of Sequences: 27780
Number of extensions: 330995
Number of successful extensions: 1058
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)