Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 555 KICSYKNESKCDLSLEPEITEIFSTS-QDP 641
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 555 KICSYKNESKCDLSLEPEITEIFSTS-QDP 641
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 621 IFQLSQAPKIDRIYFHSCTSRSSQWHSSIPF 529
           IF ++ +P  + +Y+   +SRS  + ++ PF
Sbjct: 254 IFGMALSPMTNNLYYSPLSSRSLYYVNTKPF 284


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
 Frame = +3

Query: 471 LGVAALPDGKFQALMRTVSGM---ESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDP 641
           LG AAL     +    T SG    E       +    N+   +  L   + E  +  +  
Sbjct: 414 LGAAALVAPGMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEE--AACRFS 471

Query: 642 EGVEACLGGVAQRGRRDS 695
              +A LGG  Q GR+DS
Sbjct: 472 AVAQAQLGGERQNGRKDS 489


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 536  FHSRHSSHQSLEFAVRQSRNAQLTV 462
            +H R ++H +  FAV +   A LTV
Sbjct: 1530 YHLRVTAHNNAGFAVAEYEFATLTV 1554


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 125 Y*LGVGRKLH*CFFFVGLNSRCSGVIR 45
           Y LG G   H C + + ++S C G+++
Sbjct: 35  YCLGCGDSCHKCKYGIAMSSAC-GIVQ 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 264  KTTGLRKNRASLAEWEYTSNITKENEEESIQT 359
            KTTG       +A    TS+ +  N++++IQT
Sbjct: 1266 KTTGAAVYARVIAPTTITSSQSPGNQQQTIQT 1297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,427
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)