Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K06
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putativ...    33   0.24 
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    29   4.0  
At3g26320.1 68416.m03284 cytochrome P450 71B36, putative (CYP71B...    29   4.0  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    29   5.3  
At3g51470.1 68416.m05637 protein phosphatase 2C, putative / PP2C...    28   9.2  

>At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putative
           similar to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795
          Length = 503

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 681 RVVPLHPGMLQLLQGLGSWRIFQLSQAPKIDRIYF-HSCTSRSSQWHSSIPFQTQFSSKL 505
           R V L PG+L +L GLG+     L+  P +D+I F  S T+ SS   S+       S +L
Sbjct: 202 REVGLPPGVLNILTGLGTEAGAPLASHPHVDKIVFTGSTTTGSSIMTSAAKLVKPVSLEL 261

Query: 504 G 502
           G
Sbjct: 262 G 262


>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +3

Query: 417 WQDFQDFT-LRRMFKKYSQLGVAAL-PDGKFQALMRTVSGMESNYATAKICSY---KNES 581
           W  FQD   L+   + +  + V  L P+   QAL R     +S  ++ ++ S    +N S
Sbjct: 93  WAKFQDHKPLKDPSRLFESVVVVGLHPNCDIQALERQYIARKSEGSSGRLRSALVSQNHS 152

Query: 582 KCDLSLEPEITEIFSTSQDP 641
           + + SLEP++  ++   + P
Sbjct: 153 RVEPSLEPQVLLVYPPDKQP 172


>At3g26320.1 68416.m03284 cytochrome P450 71B36, putative (CYP71B36)
           identical to Cytochrome P450 71B36 (SP:Q9LIP4)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 500

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 646 PSGSWLVENISVISGSKDRS-HLLSFLYEQIF 554
           P+G W+++ ++ + G ++RS   L   YEQ+F
Sbjct: 222 PNGGWIIDWLTGLHGQRERSVRALDAFYEQMF 253


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 681 RVVPLHPGMLQLLQGLGSWRIFQLSQAPKIDRIYF 577
           R V L PG+L +L G GS     L+  P +D+I F
Sbjct: 202 REVGLPPGVLNVLTGFGSEAGAPLASHPGVDKIAF 236


>At3g51470.1 68416.m05637 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase-2C, Mesembryanthemum
           crystallinum, EMBL:AF075580
          Length = 361

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 579 SKCDLSLEPEITEIFSTSQDPEGVEACLG 665
           S C LS EPE+ EI  T +D   +  C G
Sbjct: 248 SLCPLSCEPELEEIVLTEEDEYLIMGCDG 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,237
Number of Sequences: 28952
Number of extensions: 316744
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)