Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    33   0.051
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.5  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   3.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   4.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = -1

Query: 196 RCVSNARRDRQCLAPRTWWPPGVLCTAPVAECDLALSVP-----PYGSRPAHPRHQPSIP 32
           RC+  +  +  C   RT   P V C  P+ +C     +P     P      HP  +P  P
Sbjct: 611 RCLEASFEELPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPP 670

Query: 31  CE*F 20
           C  F
Sbjct: 671 CPYF 674


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 256 LWIGLVVSRLHHGFLPRWRERCVSNARRDRQCLAPRT 146
           +W  LV S +    +   R+ C SNA  +  C +P+T
Sbjct: 593 IWSSLVNSAVTGWIMYHVRDVCTSNAENNMTCRSPKT 629


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 23/106 (21%), Positives = 45/106 (42%)
 Frame = +1

Query: 232 ERQLVQSTVTALSDQFASVCSELEARQAAVEDACDAVARFLALLEKVLLWVETQRAFLAR 411
           E+  + S + +L    + VC +LE     V+D           LEK L  +  Q   L  
Sbjct: 197 EKSALVSDLASLQSDHSKVCEKLEVSSRQVQD-----------LEKKLAGLAQQNTELNE 245

Query: 412 PLPLADLQETLQKQTEYGNALKSCKQQAKNLADMAKEIEAIERVTS 549
            + L   ++     +  GN  K  +    ++ ++ +E+E  +R+T+
Sbjct: 246 KIQL--FEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTA 289


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -3

Query: 491 CCLQLLSAFPYSVCFCSVSCKSANGRGRARKARCVSTQRRTFSNNAR 351
           C L   S +P S  FC  +C S N    A       T+R+ F    R
Sbjct: 202 CTLPSRSNYPESTAFCEANCPSGND---ASNKEFFETRRKEFQLERR 245


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 112 PEPYRERLVATRSEVPNIADRVERLTRNARAIVEGSRDASERQLVQSTVTALSDQFASVC 291
           P+P+ ERL   R++    +D+++ + +N +   +  R+  E    +       ++F   C
Sbjct: 98  PKPFHERLAEARNQERKRSDKLKTMKKNRKQSFQRKRNILEDGKSE------EEKFPMKC 151

Query: 292 SELE--ARQAAV 321
            E++  +RQA V
Sbjct: 152 DEIDPYSRQAIV 163


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/71 (21%), Positives = 29/71 (40%)
 Frame = +1

Query: 31  TEYLADVEDVQAWIRKAELTARDRTLPPEPYRERLVATRSEVPNIADRVERLTRNARAIV 210
           T+Y   +ED  A     E  +      P   +++++    E+  I D  ER+    +  +
Sbjct: 223 TDYAFALEDEDAEDELEESVSLKTIFEPSELKDKMLTEEDEIIRITDEPERMQLYMKRNI 282

Query: 211 EGSRDASERQL 243
           + S D    Q+
Sbjct: 283 DCSEDEFREQV 293


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 466 NALKSCKQQAKNLADMAKEIEAIERVTSPGDLPSRLETAENATVDVEK 609
           NA +  ++QAK  A+   + EA E+     +  ++ E  ENA  + E+
Sbjct: 560 NAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,271
Number of Sequences: 5004
Number of extensions: 56413
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)