Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K02
         (850 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   3.8  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.1  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 78  GGTDSARSHSATGAVQRTPGGHQ 146
           GG+++  +H A G  Q   GG+Q
Sbjct: 401 GGSNTPSNHGALGNTQNNAGGNQ 423


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +1

Query: 223 DASERQLVQSTVTALSDQFASVCSELEARQAAVEDACDAVARFLALLEKVLL------WV 384
           +  E++ +Q   T    +  +   ELEAR  A+E    ++       +++ +      W+
Sbjct: 172 ELKEKRSLQEKSTNQGAEGTARVRELEARLEALEAQLQSMRAREEFQQQIHVCMARKAWL 231

Query: 385 ETQRAFLARPLPLADLQETLQKQTEYGNALKSCKQQAKNLADMAKEIE 528
           E +  FL     L DL+   +   E        KQ+ + +    KE+E
Sbjct: 232 EYEELFLLYSATLKDLKLAKKCTEEKEQQYNQFKQEMEAILARKKELE 279


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.128    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,385
Number of Sequences: 2352
Number of extensions: 16044
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)