Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_K02
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 424 ADLQETLQKQTEYGNALKSCKQQAKNLAD----MAKEIEAIERVTSPGDLPSRLETAENA 591
           ADL E  Q  +   +   SC++Q  N+A     +A+++ A     SP  +P     AE  
Sbjct: 82  ADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATR-AEIK 140

Query: 592 TVDVEKXLAKTN 627
           T  ++    K +
Sbjct: 141 TESIQPETTKVD 152


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -1

Query: 193 CVSNARRDRQCLAPRTWWPPGVL-CTAPVA 107
           CV        C    TWWP  +L CT  +A
Sbjct: 149 CVPFTTYTPVCEYDHTWWPYDILNCTIHIA 178


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -2

Query: 327 ILDSCLPSLELAAHRRELVRESRDCGLD*LSLACITASFHDGASVACQTLDAI 169
           I+DS LP      H ++L   +    +   + +  TAS     S A     A+
Sbjct: 1   IIDSMLPKYHQQFHHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAV 53


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 391  QRAFLARPLPLADLQETLQKQTEY 462
            Q+ F   PLP A L + L+  T Y
Sbjct: 955  QQEFTGPPLPYAALIDELKPATRY 978


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 391  QRAFLARPLPLADLQETLQKQTEY 462
            Q+ F   PLP A L + L+  T Y
Sbjct: 951  QQEFTGPPLPYAALIDELKPATRY 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.128    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,232
Number of Sequences: 438
Number of extensions: 4472
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)