Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K02
(850 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 33 0.18
At4g27180.1 68417.m03904 kinesin-like protein B (KATB) 29 3.9
At1g46696.1 68414.m05216 hypothetical protein slight similarity ... 29 3.9
At5g61920.1 68418.m07773 hypothetical protein 28 6.8
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 28 6.8
At4g14990.1 68417.m02303 expressed protein 28 6.8
At3g11900.1 68416.m01459 amino acid transporter family protein l... 28 6.8
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila... 28 6.8
At1g67230.1 68414.m07652 expressed protein 28 6.8
At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein con... 28 6.8
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 28 9.0
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -1
Query: 193 CVSNARRDRQCLAPRTWWPPGVLCTAPVAECDLALSVP-PYGSRPAHPRHQPSIP 32
C+ D C RT PP + C PV C L +P P G H H P
Sbjct: 628 CLEMIFTDLTCACGRTSIPPPLSCGTPVPSCQLPCPIPQPCGHSDTHGCHFGDCP 682
>At4g27180.1 68417.m03904 kinesin-like protein B (KATB)
Length = 745
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 484 KQQAKNLADMAKEIEAIERVTSPGDLPSRLETAENATVDVEKXLAKTNGLLQEL 645
K Q +L+ K E E+ S +L RLE AE ++ EK K + +QEL
Sbjct: 331 KLQVADLSTFEKMNEFEEQKESIMELKGRLEEAELKLIEGEKLRKKLHNTIQEL 384
>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
maebl (GI:20087019)[Plasmodium falciparum].
Length = 616
Score = 29.1 bits (62), Expect = 3.9
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Frame = +1
Query: 193 NARAIVEGSRDASERQLVQSTVTALSDQFASVCSELEARQAAVEDACD----AVARFLAL 360
NA+A+ + ++ + + + V L + ++LEA + A DA D A A A
Sbjct: 396 NAKAVEKANKVMNRMKAAELQVQKLEVNNIDLTAKLEAGKNAYLDAVDKETQARADLKAC 455
Query: 361 LEKVLLWVETQRAFLARPLPLADLQETLQKQ-----TEYGNALKSCK--QQAKNLADMAK 519
EK+ E Q A +A D + ++ Q ++YGN K + + K A AK
Sbjct: 456 EEKLKKMEEEQAALIA--AARTDERRKVRAQFHDFSSKYGNFFKESEEVETLKVRAAEAK 513
Query: 520 EIEAIERVTSPGDLPSRLETAENATVDVEK 609
+ G++P + E+ D EK
Sbjct: 514 ANRELLEEIEKGEIPDLSKELESVRADEEK 543
>At5g61920.1 68418.m07773 hypothetical protein
Length = 238
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +1
Query: 46 DVEDVQAWIRKAELTARDRTLPPEPYRERLVATRSEVPNIADRVERLTRNARAIVEGSRD 225
+V+ ++A IRK E D + E++ V N + + R ++A +E R
Sbjct: 91 EVQGLRAHIRKTET---DHEIQIRSTLEKIAKMEGMVKN-RENIRREVQSAH--IEAHRL 144
Query: 226 ASERQLVQSTVTALSDQFASVCSELEARQAAVED 327
A ER+ + S V VC E E+ +A+ ++
Sbjct: 145 AREREELASKVKLGMKDLKKVCLEAESLEASSQE 178
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 570 SRR*VSWTRDAF-DCLYFFCHVC*IFRLLLTTLERVP 463
S+R SW A DC+ C C I LL TL +VP
Sbjct: 45 SKRCRSWAAAAIADCVALCCCPCAIINLLTLTLVKVP 81
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 551 GLVTRSIASISFAMSAKFFACCLQLLSAFPYSVCFCSVSCKS 426
GL + S+A+ + A AK C+Q + S C +V C S
Sbjct: 602 GLPSDSLAAETIANLAKAVTVCVQAMDLRALSACLAAVVCSS 643
>At3g11900.1 68416.m01459 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 432
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 148 SEVPNIADRVERLTRNARAIVEGSRDASERQLVQSTVTAL--SDQFASVCSELEARQAAV 321
+++ NI + N ++EG S+R + ST+ L + A C E A A+
Sbjct: 181 ADICNIIAMCFVVKENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLAL 240
Query: 322 EDACDAVARFLALLEKVL 375
E + F LL KVL
Sbjct: 241 ESSMREREAFPKLLAKVL 258
>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1171
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 421 LADLQETLQKQTEYGNALKSCKQQAKNLADMAKEIEAIERVTSPGDLPSRLETAENATVD 600
L+D E L EY NA + K+Q ++ + K++ E + LE A N TV+
Sbjct: 899 LSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFR---EYKKILENA-NLTVE 954
Query: 601 VEKXL-AKTNGLLQEL 645
K L A++ L+ L
Sbjct: 955 KMKRLKARSRRLINRL 970
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 28.3 bits (60), Expect = 6.8
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 6/181 (3%)
Frame = +1
Query: 10 KRARTTRTEYLADVEDVQAWIRKAELTARDRTLPPEPYRERLVATRSEVPNIADRVERLT 189
K+ R +ADVE + +RKA + L E + L A +E+ AD +LT
Sbjct: 99 KQERNAHLIAIADVEKREEGLRKALGIEKQCALDLEKALKELRAENAEIKFTAD--SKLT 156
Query: 190 RNARAIVEGSRDASERQL-VQSTVTALSDQFASV---CSELEARQAAVEDACDAV--ARF 351
A A+V R E+ L V++ + A+ + A V S++E + VE ++ RF
Sbjct: 157 -EANALV---RSVEEKSLEVEAKLRAVDAKLAEVSRKSSDVERKAKEVEARESSLQRERF 212
Query: 352 LALLEKVLLWVETQRAFLARPLPLADLQETLQKQTEYGNALKSCKQQAKNLADMAKEIEA 531
+ E+ E A L++ DL+E +K E + + K D A E +
Sbjct: 213 SYIAER-----EADEATLSK--QREDLREWERKLQEGEERVAKSQMIVKQREDRANESDK 265
Query: 532 I 534
I
Sbjct: 266 I 266
>At1g51490.1 68414.m05795 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to Cyanogenic Beta-Glucosidase
(GI:1311386) (pdb:1CBG) [Trifolium repens] (J. Mol.
Biol. 229 (3), 791-793 (1993))
Length = 484
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 VERLTRNARAIVEGSRDASERQLVQSTVTALSD--QFASVCSELEARQAAVEDACDAVAR 348
VE L + R I S+ +++L+ AL+D + CS L + A+ED C+
Sbjct: 379 VELLLLSTR-IPSDSKSHQKQELLMLIANALADNGRIQFQCSHLSCLKCAIEDGCNVAGY 437
Query: 349 F 351
F
Sbjct: 438 F 438
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 459 FSLFL*RLLQVGQWERPRKESTLC-FDPEE--NFLQQC*ESSYCITRILDSC 313
F+L RLLQ+ +W+ E L P E + Q C SYC T+ +C
Sbjct: 274 FTLTTERLLQISRWDTTSSEWNLFGVLPTEKCDLYQICGRDSYCDTKTSPTC 325
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.128 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,641
Number of Sequences: 28952
Number of extensions: 328398
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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