Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K01
(1035 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 0.037
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.053
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 30 2.7
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 30 3.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 30 3.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 32.3 bits (70), Expect(2) = 0.037
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
Frame = +3
Query: 540 PPPPXX--LLPPPXXPAXXXKXXRGXGQKTPPXXAXXFXSPPPXSXSXXXXXXXXXXXXX 713
PPPP PPP A RG PP PPP S S
Sbjct: 288 PPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPP 347
Query: 714 XNXSYXXAGXSPXSAXAXXPAXPPXXNIRARPPXSXPXXFXSRASXSXP 860
G +P P PP + PP P +S P
Sbjct: 348 P----PSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNP 392
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 540 PPPPXXLLPPPXXPAXXXKXXRGXGQKTPPXXAXXFXSPPP 662
PPPP PPP P + G PP +PPP
Sbjct: 366 PPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGR-GAPPP 405
Score = 23.0 bits (47), Expect(2) = 0.037
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 969 PPXPXXGRRXPPP 1007
PP P GR PPP
Sbjct: 393 PPPPPPGRGAPPP 405
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 35.9 bits (79), Expect = 0.053
Identities = 24/85 (28%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Frame = +2
Query: 347 GXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXXX--RXXGXPPPXXFXPPXXXTXXXXGX 520
G + PPPP GG G + P PPP PP
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPP 975
Query: 521 XFXXSXPPPXXXXPPPPXXTRXXXK 595
S PPP PPPP R K
Sbjct: 976 PPGGSAPPPPPPPPPPPPPMRKLGK 1000
Score = 29.5 bits (63), Expect = 4.6
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 540 PPPPXXLLPPPXXPAXXXKXXRGXGQKTPPXXAXXFXSPPP 662
PPPP PPP P G G P PPP
Sbjct: 945 PPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPP 985
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 889 RXRLPSQTXRXXAVDTPXPPVXXRDAPPPXPXXDXEXPPPXVXRAXP 1029
R PSQT + PP PPP P + PPP + P
Sbjct: 896 RNESPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAP 942
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 516 GXSFXXLXPPPPXXLLPPPXXPAXXXKXXRGXGQKTPPXXAXXFXSPPP 662
G S PPP PPP P G PP PPP
Sbjct: 938 GGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPP 986
Score = 28.7 bits (61), Expect = 8.1
Identities = 24/85 (28%), Positives = 26/85 (30%)
Frame = +3
Query: 363 PPPPRXGGXXSXXXXXXXGALFXGAPFXXGXRXXPPXXXFXXRXXXXFXGGGXSFXXLXP 542
PPPP GG G+ P G PP GGG L P
Sbjct: 921 PPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPP---GGGAP--PLPP 975
Query: 543 PPPXXLLPPPXXPAXXXKXXRGXGQ 617
PP PPP P R G+
Sbjct: 976 PPGGSAPPPPPPPPPPPPPMRKLGK 1000
Score = 28.7 bits (61), Expect = 8.1
Identities = 22/77 (28%), Positives = 22/77 (28%)
Frame = +2
Query: 464 PPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAX 643
PPP P G PPP PPPP G PP G
Sbjct: 923 PPPPGGNAPLPPPPP--GGSAPSQPPPPGGNAPPPPPPP----------GGSAPPPGGGA 970
Query: 644 VXLPPPXFXXGXXSPAP 694
LPPP P P
Sbjct: 971 PPLPPPPGGSAPPPPPP 987
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 33.5 bits (73), Expect = 0.28
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +2
Query: 533 SXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAXVXLPPPXFXXGXXSPAPSVGG 706
S PPP PPPP T PP PPP G P P G
Sbjct: 356 SPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNG 413
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 931 DTPXPPVXXRDAPPPXPXXDXEXPPPXVXRAXP 1029
+TP PP PPP P + PPP P
Sbjct: 363 NTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPP 395
Score = 29.5 bits (63), Expect = 4.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 937 PXPPVXXRDAPPPXPXXDXEXPPPXVXRAXP 1029
P PP + PPP P + PPP P
Sbjct: 355 PSPPPPTNNTPPPPPPTNKPPPPPPPTNGPP 385
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 32.3 bits (70), Expect = 0.66
Identities = 36/140 (25%), Positives = 39/140 (27%), Gaps = 1/140 (0%)
Frame = +2
Query: 287 PGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXXXRXXGXP 466
PG GG + P G GG PPPP G G + P G P
Sbjct: 484 PG-GGQGWGQPPPGAGQGGG------PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGP 536
Query: 467 PPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAX- 643
PP G + P PPP G PP GA
Sbjct: 537 PPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGA----------GQGGPPPPGAGQ 586
Query: 644 VXLPPPXFXXGXXSPAPSVG 703
PPP G P P G
Sbjct: 587 EGPPPPGAGQGGGPPPPGAG 606
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 30.3 bits (65), Expect = 2.7
Identities = 22/77 (28%), Positives = 22/77 (28%)
Frame = +2
Query: 338 GGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXXXRXXGXPPPXXFXPPXXXTXXXXG 517
GG G PP GG RGP R P P PP G
Sbjct: 68 GGYGGGPPRGPPRGHPMRGRGAPYGRGGPPSRGPP--RGPPLPGPPRRGPPPDRDSGYGG 125
Query: 518 XXFXXSXPPPXXXXPPP 568
PPP PPP
Sbjct: 126 YGDRYDRPPPDRRPPPP 142
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 898 LPSQTXRXXAVDTPXPPVXXRDAPPPXPXXDXEXPPP 1008
+P+ + P PP D PPP P + PPP
Sbjct: 541 IPAVAPAVTPSEEPPPPPPGVDIPPPLPPSEDPKPPP 577
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 928 VDTPXPPVXXRDAPPPXPXXDXEXPPP 1008
+ P PP PPP P E PPP
Sbjct: 563 IPPPLPPSEDPKPPPPPPEPPEECPPP 589
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.9 bits (64), Expect = 3.5
Identities = 26/97 (26%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
Frame = +3
Query: 540 PPPPXXLLPPP--XXPAXXXKXXRGXGQKTPPXXAXXFXSPPPXSXSXXXXXXXXXXXXX 713
PPPP PPP P G PP PPP S
Sbjct: 167 PPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSS-----GPPPPPPG 221
Query: 714 XNXSYXXAGXSPXSAXAXXPAXPPXXNIRARPPXSXP 824
S P + PA PP N R PP P
Sbjct: 222 RGPSQRSLAPPPTGSSRPLPAPPPGEN-RPPPPMRGP 257
Score = 29.1 bits (62), Expect = 6.1
Identities = 22/77 (28%), Positives = 24/77 (31%)
Frame = +2
Query: 464 PPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAX 643
PPP PP G PPP PPPP RG PP +
Sbjct: 243 PPPGENRPPPPMRGPTSG-----GEPPPPKNAPPPPKRGSSNPPPPPTRG----PPSNSF 293
Query: 644 VXLPPPXFXXGXXSPAP 694
PP +PAP
Sbjct: 294 TTQGPPLPPSRDQAPAP 310
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +1
Query: 874 YXXAPRXRLPSQTXRXXAVDTPXPPVXXRDAPPPXPXXDXEXPPP 1008
Y P+ PS+ + P P R APPP P PPP
Sbjct: 434 YQDTPKT-YPSKNQQKANRGNPRPASSSRGAPPPVPPSRGPPPPP 477
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.9 bits (64), Expect = 3.5
Identities = 26/97 (26%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
Frame = +3
Query: 540 PPPPXXLLPPP--XXPAXXXKXXRGXGQKTPPXXAXXFXSPPPXSXSXXXXXXXXXXXXX 713
PPPP PPP P G PP PPP S
Sbjct: 79 PPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSS-----GPPPPPPG 133
Query: 714 XNXSYXXAGXSPXSAXAXXPAXPPXXNIRARPPXSXP 824
S P + PA PP N R PP P
Sbjct: 134 RGPSQRSLAPPPTGSSRPLPAPPPGEN-RPPPPMRGP 169
Score = 29.1 bits (62), Expect = 6.1
Identities = 22/77 (28%), Positives = 24/77 (31%)
Frame = +2
Query: 464 PPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAX 643
PPP PP G PPP PPPP RG PP +
Sbjct: 155 PPPGENRPPPPMRGPTSG-----GEPPPPKNAPPPPKRGSSNPPPPPTRG----PPSNSF 205
Query: 644 VXLPPPXFXXGXXSPAP 694
PP +PAP
Sbjct: 206 TTQGPPLPPSRDQAPAP 222
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +1
Query: 874 YXXAPRXRLPSQTXRXXAVDTPXPPVXXRDAPPPXPXXDXEXPPP 1008
Y P+ PS+ + P P R APPP P PPP
Sbjct: 346 YQDTPKT-YPSKNQQKANRGNPRPASSSRGAPPPVPPSRGPPPPP 389
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 8.1
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 200 PTFSXXVGSXGXPXQXXSPG*RGESGV-XFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPP 376
P G G P PG RG++G+ PGKG P + G G + PP P
Sbjct: 3324 PGLKGIKGDKGFPGMVGFPGLRGKTGLPGKPGKGKPGP-----TGPKGEQGRSISGPPGP 3378
Query: 377 XG 382
G
Sbjct: 3379 PG 3380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,688
Number of Sequences: 59808
Number of extensions: 424331
Number of successful extensions: 2063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3094779573
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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