Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_K01
(1035 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 38 0.015
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 37 0.027
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 37 0.027
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 37 0.027
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 32 0.77
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 31 1.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.3
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 30 3.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 30 3.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 30 3.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 30 3.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 30 3.1
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 3.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.1
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 29 5.4
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 29 5.4
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 29 5.4
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 29 5.4
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 29 7.2
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 7.2
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 9.5
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 9.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 9.5
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 28 9.5
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 28 9.5
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 28 9.5
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 37.5 bits (83), Expect = 0.015
Identities = 24/99 (24%), Positives = 28/99 (28%)
Frame = +2
Query: 365 PPPPXGGXFXXXKXXXXGGXLXRGPXXXRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPP 544
PPPP G G R P + G PPP P + PP
Sbjct: 44 PPPPTG---EPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPP 100
Query: 545 PXXXXPPPPXXTRXXXKXXAWRGAKNXPPXGAXVXLPPP 661
PPPP ++ PP PPP
Sbjct: 101 KGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 139
Score = 35.1 bits (77), Expect = 0.083
Identities = 34/136 (25%), Positives = 37/136 (27%), Gaps = 12/136 (8%)
Frame = +2
Query: 290 GKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXK---------XXXXGGXLXRGPX 442
G G P Q G G A PPPP G G R P
Sbjct: 39 GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPP 98
Query: 443 XXRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPP---XXXXPPPPXXTRXXXKXXAWRG 613
+ G PPP PP G PPP PPPP
Sbjct: 99 PPKGTGTPPP----PPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNA 154
Query: 614 AKNXPPXGAXVXLPPP 661
++ PP PPP
Sbjct: 155 SRRPPPPPKGTGSPPP 170
Score = 34.3 bits (75), Expect = 0.14
Identities = 31/133 (23%), Positives = 35/133 (26%), Gaps = 9/133 (6%)
Frame = +2
Query: 290 GKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXX--------GGXLXRGPXX 445
G G P Q G G A PPPP G G R P
Sbjct: 102 GTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPP 161
Query: 446 XRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAK-N 622
+ G PPP P + P PPPP + +
Sbjct: 162 PKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPP 221
Query: 623 XPPXGAXVXLPPP 661
PP G PPP
Sbjct: 222 PPPKGTGSPTPPP 234
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/100 (25%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Frame = +2
Query: 365 PPPPXGGXFXXXKXXXXGGXLXRGPXXXRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPP 544
PPPP G G R P + G P P P + G PP
Sbjct: 200 PPPPTG---EPQDLSAEGYASRRPPPPPKGTGSPTPPPTGEPQDLSGE--GNASRRPPPP 254
Query: 545 PXXX-XPPPPXXTRXXXKXXAWRGAKNXPPXGAXVXLPPP 661
P PPPP ++ PP PPP
Sbjct: 255 PKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPP 294
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/77 (22%), Positives = 21/77 (27%)
Frame = +2
Query: 431 RGPXXXRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWR 610
R P + G PPP P + P PPPP
Sbjct: 32 RPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGN 91
Query: 611 GAKNXPPXGAXVXLPPP 661
++ PP PPP
Sbjct: 92 ASRRPPPPPKGTGTPPP 108
Score = 28.7 bits (61), Expect = 7.2
Identities = 26/102 (25%), Positives = 28/102 (27%), Gaps = 8/102 (7%)
Frame = +2
Query: 290 GKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXX--------GGXLXRGPXX 445
G G P Q G A PPPP G G R P
Sbjct: 195 GTGTPPPPPTGEPQDLSAEGYASRRPPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPP 254
Query: 446 XRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPP 571
+ G PPP P + G PPP PPP
Sbjct: 255 PKGTGSPPPPPTGEPQDLS--GEGNASRRPPPPPKGTGTPPP 294
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.7 bits (81), Expect = 0.027
Identities = 35/149 (23%), Positives = 39/149 (26%), Gaps = 3/149 (2%)
Frame = +2
Query: 266 GESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXX 445
G GV G GG Q G PP K P
Sbjct: 199 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 258
Query: 446 XRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAW---RGA 616
PPP PP T S PPP PPPP R + +
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Query: 617 KNXPPXGAXVXLPPPXFXXGXXSPAPSVG 703
+ PP G PPP +P G
Sbjct: 319 GSPPPAGTGSPPPPPRQKRQAPERSPPTG 347
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.7 bits (81), Expect = 0.027
Identities = 35/149 (23%), Positives = 39/149 (26%), Gaps = 3/149 (2%)
Frame = +2
Query: 266 GESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXX 445
G GV G GG Q G PP K P
Sbjct: 220 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 279
Query: 446 XRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAW---RGA 616
PPP PP T S PPP PPPP R + +
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Query: 617 KNXPPXGAXVXLPPPXFXXGXXSPAPSVG 703
+ PP G PPP +P G
Sbjct: 340 GSPPPAGTGSPPPPPRQKRQAPERSPPTG 368
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.027
Identities = 35/149 (23%), Positives = 39/149 (26%), Gaps = 3/149 (2%)
Frame = +2
Query: 266 GESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXX 445
G GV G GG Q G PP K P
Sbjct: 205 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 264
Query: 446 XRXXGXPPPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAW---RGA 616
PPP PP T S PPP PPPP R + +
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Query: 617 KNXPPXGAXVXLPPPXFXXGXXSPAPSVG 703
+ PP G PPP +P G
Sbjct: 325 GSPPPAGTGSPPPPPRQKRQAPERSPPTG 353
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.33
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPG-KGGPXXXRVPFSQGXGGXGXAXXXPPPP 376
G G P SPG G+ G PG G P P + G G G A PP
Sbjct: 184 GQAGAPGNPGSPGKSGQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAPGPAGPP 236
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.33
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPG-KGGPXXXRVPFSQGXGGXGXAXXXPPPP 376
G G P SPG G+ G PG G P P + G G G A PP
Sbjct: 184 GQAGAPGNPGSPGKSGQRGRGLPGPSGAPGPQGPPGAPGQPGSGNAPGPAGPP 236
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 200 PTFSXXVGSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGG-XGXAXXXPPP 373
P G+ G P + SPG +G+ G+ G G P P G G G PPP
Sbjct: 270 PGLQGKPGNDGYPGRDGSPGDQGDDGIP-GGPGKPGQKGYPGPDGSAGFPGGCDHCPPP 327
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXR 316
G G P SPG GE+G+ PG+ GP R
Sbjct: 147 GPPGRPGSDGSPGSDGEAGI--PGRDGPDAPR 176
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGP-XXXRVPFSQGXGGXGXAXXXPPPP 376
G G P Q PG + G PG GP P + G G G P PP
Sbjct: 233 GQPGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPP 285
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Frame = +2
Query: 287 PGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXKXXXXGGXLXRGPXXXRXXG-- 460
PG P QG GG G PPPP G GG GP G
Sbjct: 387 PGAFAPPPSAFGAPQGPGGPGGY--GPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAY 444
Query: 461 XPPPXXFXP 487
PPP F P
Sbjct: 445 GPPPTGFPP 453
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPG-KGGPXXXRVPFSQGXGGXGXAXXXPPPPXGG 385
GS G P PG +G +G PG GGP P G G G A P G
Sbjct: 176 GSAGHPGAPGQPGSKGNNGA--PGAAGGPGQPGRPGKDGQRGKGSAGAPGAPGKAG 229
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPP 373
G G P PG +G+SG+ P G P VP +G GG P P
Sbjct: 750 GEVGQPGFPGLPGMKGDSGLPGP-PGLPGHPGVPGDKGFGGVPGLPGIPGP 799
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPP 373
G G P PG +G+SG+ P G P VP +G GG P P
Sbjct: 749 GEVGQPGFPGLPGMKGDSGLPGP-PGLPGHPGVPGDKGFGGVPGLPGIPGP 798
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPP 373
G G P PG +G+SG+ P G P VP +G GG P P
Sbjct: 749 GEVGQPGFPGLPGMKGDSGLPGP-PGLPGHPGVPGDKGFGGVPGLPGIPGP 798
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPP 373
G G P PG +G+SG+ P G P VP +G GG P P
Sbjct: 750 GEVGQPGFPGLPGMKGDSGLPGP-PGLPGHPGVPGDKGFGGVPGLPGIPGP 799
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPP 373
G G P PG +G+SG+ P G P VP +G GG P P
Sbjct: 786 GEVGQPGFPGLPGMKGDSGLPGP-PGLPGHPGVPGDKGFGGVPGLPGIPGP 835
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFP---GKGGPXXXRVPFSQGXGGXGXAXXXPPPPXG 382
G G P Q PG G + V P G GP P Q G G A PP P G
Sbjct: 226 GQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQ-DGSGGAAQPGPPGPPG 281
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Frame = +2
Query: 467 PPXXFXPPXXXTXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGA-KNXPPXGAX 643
PP PP F P P PPPP + G PP
Sbjct: 47 PPSGILPPGQSIPKPS---FFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGG 103
Query: 644 VXLPPPXFXXGXXSPAPSVGGXXXQ 718
+ PPP F P PS G Q
Sbjct: 104 IPPPPPMFGAPPPPPPPSGLGVAPQ 128
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 937 PXPPVXXRDAPPPXPXXDXEXPPPXVXRAXP 1029
P PP+ PPP P PPP + A P
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.1
Identities = 27/89 (30%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Frame = +2
Query: 230 GXPXQXXSPG*RGESGVXF--PGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGGXFXXXK 403
G P + PG G S P GP +P GG PPPP GG
Sbjct: 1529 GFPQRGGGPG-MGPSQYYHDSPQNRGPPMGGLP--PPHGGMNGWRGGPPPPRGGSHCQGP 1585
Query: 404 XXXXGGXLXRGPXXXRXXGXPPPXXFXPP 490
GG R G PPP PP
Sbjct: 1586 PPLMGGPPPR--LGMPPPGPPPPNGGPPP 1612
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 934 TPXPPVXXRDAPPPXPXXDXEXPPPXVXRA 1023
T PP+ APPP P PPP A
Sbjct: 346 TEIPPIISPPAPPPPPPPPPPPPPPQTPSA 375
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 128 LQDPHWVKVPGRTAIFSKLXXALYPTFSXXVGSXGXPXQXXSPG*RGESGVXFPGK-GGP 304
+ +P +P R I + YP G G + +PG RGE G PG+ G P
Sbjct: 133 IYEPIQCPLPSRDCIICPVGLPGYPGRDGLPGEPGPNGKPGNPGYRGEDGK--PGRPGEP 190
Query: 305 XXXRVPFSQGXGG 343
+P G G
Sbjct: 191 GSSGLPGRPGSDG 203
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Frame = +2
Query: 218 VGSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXG--GXGXAXXXPPPPXGGXF 391
V S P PG + G PG G VPF G G A PPP G
Sbjct: 162 VASFPSPDTSIRPGGQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPN 221
Query: 392 XXXKXXXXGG-XLXRGP 439
GG + GP
Sbjct: 222 MGGPPNGYGGYGMMNGP 238
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Frame = +2
Query: 218 VGSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXG--GXGXAXXXPPPPXGGXF 391
V S P PG + G PG G VPF G G A PPP G
Sbjct: 159 VASFPSPDTSIRPGGQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPN 218
Query: 392 XXXKXXXXGG-XLXRGP 439
GG + GP
Sbjct: 219 MGGPPNGYGGYGMMNGP 235
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Frame = +2
Query: 200 PTFSXXVGSXGXPXQXXSPG*RGESG-VXFPGKGG-PXXXRVPFSQGXGGXGXAXXXPPP 373
P GS G P Q PG G G PG G P P G G G A P
Sbjct: 156 PGADGQAGSPGAPGQDGQPGGPGAQGDAGAPGNDGTPGQDGAPGQNGQRGNGAAGAPGPQ 215
Query: 374 PXGG 385
G
Sbjct: 216 GPAG 219
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 28.7 bits (61), Expect = 7.2
Identities = 22/59 (37%), Positives = 22/59 (37%)
Frame = +2
Query: 200 PTFSXXVGSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPP 376
P S G G P Q PG GES PG GP P SQG G P P
Sbjct: 200 PGPSGQPGQDGHPGQDGQPGQPGESR-EVPGAPGPAGQ--PGSQGEPGPSGPDGRPGQP 255
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGGPXXXRVPFSQGXGGXGXAXXXPPPP 376
G G P PG GE G P +G P VP G G P PP
Sbjct: 208 GPPGQPGADGQPGMPGEPGKDAPQEGSP----VPGDPGPPGDSGIPGPPGPP 255
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 221 GSXGXPXQXXSPG*RGESGVXFPGKGG 301
G G P +PG GE+G FPG+ G
Sbjct: 805 GLDGYPGAPGAPGAPGETGFGFPGQDG 831
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 9.5
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 GXPXQXXSPG*RGESGVXFPG-KGGPXXXRVPFSQGXGGXGXAXXXPPPPXGG 385
G P Q G S PG GGP PF Q G PPP GG
Sbjct: 108 GVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGG 160
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 9.5
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 GXPXQXXSPG*RGESGVXFPG-KGGPXXXRVPFSQGXGGXGXAXXXPPPPXGG 385
G P Q G S PG GGP PF Q G PPP GG
Sbjct: 388 GVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGG 440
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 28.3 bits (60), Expect = 9.5
Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Frame = +2
Query: 464 PPPXXFXPPXXX--TXXXXGXXFXXSXPPPXXXXPPPPXXTRXXXKXXAWRGAKNXPPXG 637
PP PP T + PPP P P T+ +W G+ PP
Sbjct: 176 PPAPIIPPPQPPVMTASAAAAAYRDRLPPPPPKPPMPDLRTKEPIGIRSWNGSGIPPPP- 234
Query: 638 AXVXLPPPXFXXGXXSP 688
LPP SP
Sbjct: 235 ---ILPPVACLSSTMSP 248
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -2
Query: 674 RXRXRGGGGKXXRRXGGXFLPXATXXFXXSSGXGRGGEEXXXXGG 540
R RGG G R GG F F G RGG+ GG
Sbjct: 167 RGSDRGGRGGFGRGGGGGFRGGDRGGFGGGRGGFRGGDRGGFRGG 211
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 287 PGKGGPXXXRVPFSQGXGGXGXAXXXPPPPXGG 385
PG GG S G GG PPPP GG
Sbjct: 188 PGGGGGGMGGGGGSGGSGGGSGRFPPPPPPYGG 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,078
Number of Sequences: 27780
Number of extensions: 388061
Number of successful extensions: 2339
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2741106356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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