Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J24
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 251 5e-67
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 58 7e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 8e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 44 2e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.024
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.39
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.90
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 30 2.1
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 6.3
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 251 bits (615), Expect = 5e-67
Identities = 127/171 (74%), Positives = 137/171 (80%)
Frame = +3
Query: 156 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 335
G+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRKDEQDRCITI
Sbjct: 10 GIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITI 69
Query: 336 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 515
KSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 70 KSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGAL 127
Query: 516 XXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQT 668
QTETVLRQAIAERIKP+LFMNKMDR YQT
Sbjct: 128 VVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQT 178
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 709 YNDDGGPMXEVRVXPTRALLVXGXVFMGWA 798
Y+D+ GPM ++V P + + G GWA
Sbjct: 193 YSDEDGPMGNIQVGPEKGTVAFGSGLHGWA 222
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 58.4 bits (135), Expect = 7e-09
Identities = 43/153 (28%), Positives = 68/153 (44%)
Frame = +3
Query: 165 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 344
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 345 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 524
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 525 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 623
QTE ++ I I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 8e-09
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +3
Query: 180 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 341
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 29.1 bits (62), Expect(2) = 8e-09
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 444 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 620
+ + GHVDFS EV+ +L G + QT + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 471 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 623
+ +V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 71
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +3
Query: 477 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 623
+V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 141
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 36.7 bits (81), Expect = 0.024
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 414 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 593
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 594 PILFMNKMDR 623
I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 189 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 290
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 162 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 257
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.90
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 189 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 290
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 435 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 614
I +D+PGH F++ +VTD + QT+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 615 MDR 623
+D+
Sbjct: 200 IDK 202
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 694 RHYSPYNDDGGPMXEVRVXPTRALLV 771
RHYS Y+DD M + PTRAL V
Sbjct: 935 RHYSDYSDDSEYMSQEEELPTRALHV 960
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -2
Query: 547 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 377
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 376 FSSSSK 359
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 508 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 386
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 565 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 425
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 547 THTPDTQSTTTRAPSVTRSAAVTSEEKST 461
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -1
Query: 269 TSNDTGLGNQRVREG*LAVIDVGDHRHVADIPLLVHHPTGSRLXVKFTILDGL*FLFY*T 90
T ND +G + LA +DV + + A++P+ TGSR ++ T+ DG
Sbjct: 2191 TDNDASIGFE------LATVDVLESQGKANLPVKRTGHTGSRQVLRVTVSDGT--ANKGP 2242
Query: 89 NYHTPA 72
+YH PA
Sbjct: 2243 DYHEPA 2248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,243,133
Number of Sequences: 59808
Number of extensions: 506737
Number of successful extensions: 1569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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