Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J23
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383...    31   0.87 
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     31   1.2  
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    30   2.7  
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697     29   4.7  
06_03_1466 + 30350112-30350978                                         29   6.2  
05_04_0035 + 17378541-17381276                                         29   6.2  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    28   8.1  
07_01_0245 - 1803170-1803887,1803971-1804641                           28   8.1  

>02_01_0526 -
           3830705-3830932,3831684-3831748,3831958-3832104,
           3832208-3832256
          Length = 162

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +3

Query: 201 GRGEYRQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LG 380
           G G+ R+R +     +  +RE    R ++ +R  S+D Q +     +R R      G  G
Sbjct: 3   GEGKSRKRRSSPSSGEEEERERKKRRDKKESRRSSRDEQAEEEEEEERRRRKKKKHGDRG 62

Query: 381 QNSDAHERAHHSEQRQR 431
           ++ +   +  HS+++++
Sbjct: 63  KDKERDSKEKHSKEKEK 79


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
 Frame = +3

Query: 195 LLGRGEYRQRGTVFGLPQLLQREPTVPRGQQRAR-----HGSQDPQQDPGARRKRLRH-- 353
           +LG G+   RGT  G   L++    +  G +  R     H +  P+   G     +R   
Sbjct: 63  VLGGGQGGGRGTTAGAGGLVRGGSELAVGAELRRRVPTCHVNDFPELGIGGTPVLVRRWR 122

Query: 354 PGLHQG*LGQNSDAHERAHHSEQRQRHYEN 443
           P  H+      S  H   HH  QRQRH+ +
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHHHH 152


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 3   LDTTLRYTCLPVVSEGAHDDGSTGQAPQLRDQRGPEVS 116
           LD   RY+ LP   E    D S     +  D++ PE+S
Sbjct: 260 LDEACRYSSLPANGESVRKDSSDSDRSKFEDKKKPELS 297


>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
          Length = 375

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 331 APGSCWGSCDPCRARC*PLGTVGSRCSSCGSP 236
           A  + W  CDPC        T GS C SCG+P
Sbjct: 18  AAEASW-ECDPCACAA----TAGSPCGSCGAP 44


>06_03_1466 + 30350112-30350978
          Length = 288

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -3

Query: 683 SLPCRSXPVDTHLKSR--SIRSCLLR 612
           SLPCRS P+ +HL+S   ++RS LL+
Sbjct: 34  SLPCRSHPLLSHLQSHIAAVRSWLLQ 59


>05_04_0035 + 17378541-17381276
          Length = 911

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +3

Query: 201 GRGEYRQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLH---QG 371
           G G      T F  PQ+ Q     P+  Q A   +Q PQ   GA +     PG H   + 
Sbjct: 748 GYGTSHPWHTGFNAPQVQQPSYGGPQSSQHAVGSTQPPQAQFGAPQAPPPLPGFHYQNRP 807

Query: 372 *LGQNSDAHER 404
             GQ  D H R
Sbjct: 808 EYGQAVDQHNR 818


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 GPDMGRKIPNRIPVRDENDCDTRAYIKD 372
           GP  G  +P+R P++D  DC+  A I+D
Sbjct: 420 GPSRGGCVPSRNPLKDPGDCEAVA-IRD 446


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 290 PLLTSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISFPGKGSLSSLY 144
           P  +  YC+  L +L       PL + PSP+ S      P  G+L++ +
Sbjct: 33  PSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,556,626
Number of Sequences: 37544
Number of extensions: 454243
Number of successful extensions: 1277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)