Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J23
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13279| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 31   1.2  
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.3  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  28   8.3  

>SB_13279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +3

Query: 42  SEGAHDDGSTGQAPQLRDQRGPEVSVLRPAVHRAVQAAQAPLPWKA 179
           SE + DDG   +    RD+R P  SV R A    V+  + PLPW A
Sbjct: 115 SEDSVDDGKKKKRKSFRDRRRPLFSVFRWA---GVREEKIPLPWVA 157


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 88  YVTNVDLKYPYSDLPYIGQY-KLLKLPFPGKLIEH 189
           Y+ +VDLKY Y  +P   ++ K+LK  + GKL ++
Sbjct: 298 YMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 291 ARHGSQDPQQDPGARRKRLRHPGLH-QG*LGQNSDAHERAHHSEQRQR 431
           ARHGSQD  QDPG +      PG H  G    N++ + R  H  +R+R
Sbjct: 595 ARHGSQDQAQDPGDQ------PGAHPSGQFLFNAECYHR--HCSRRRR 634


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -1

Query: 364 CKPGCRSRFRRAPGSC---WGSCDP-CRARC*PLGTVGSRCSSCG 242
           C   CR+ +    G+C   WG+C   CR      GT G  C +CG
Sbjct: 236 CGKRCRTCYAGC-GTCGKGWGTCGKGCRTSGKGCGTCGKGCGTCG 279


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +3

Query: 207  GEYRQRGTVFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQN 386
            G + Q G +  L QL Q+     +G+Q      Q  QQ P   + R   PG   G   ++
Sbjct: 888  GLFTQTGQIL-LTQLRQQGLLNSQGEQLGNMIQQQVQQ-PNGVQARPNMPGTLPGNYPES 945

Query: 387  SDAHERAHHSEQRQRHYEN 443
               H  +HH   +   Y +
Sbjct: 946  HKRHRHSHHHHYQHYQYNH 964


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 60  DGSTGQAPQLRDQRGPEV--SVLRPAVHRAV 146
           D  TG A  +RDQ GP+V  S+L P  H ++
Sbjct: 695 DQQTGPAMHVRDQEGPDVAISILPPDEHASL 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,766,314
Number of Sequences: 59808
Number of extensions: 508612
Number of successful extensions: 1499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)