Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J23
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote...    32   0.55 
At1g35560.1 68414.m04415 TCP family transcription factor, putati...    30   1.7  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   2.9  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    29   5.1  
At5g38150.1 68418.m04598 expressed protein                             28   6.8  
At4g31440.1 68417.m04468 hypothetical protein                          28   9.0  
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    28   9.0  
At1g17680.2 68414.m02189 transcription factor-related low simila...    28   9.0  
At1g17680.1 68414.m02188 transcription factor-related low simila...    28   9.0  

>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 220

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 261 EPTVPRGQQRARHGSQDPQQDPGARRKRL 347
           +P   R   R+RHGS D   DP  RR+R+
Sbjct: 124 QPKNTRRHHRSRHGSIDSSNDPSVRRRRV 152


>At1g35560.1 68414.m04415 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
           [Oryza sativa]
          Length = 341

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 231 VFGLPQLLQREPTVPRGQQRARHGSQDPQQDPGARRKRLRH 353
           +F  P  L +EP    G +  + GS+ P QDPG+ R R ++
Sbjct: 183 LFKDPNFLDQEP----GSRSPKPGSEAPDQDPGSTRSRTQN 219


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -1

Query: 358 PGCRSRFRRAPGSC-WGSCDPCRARC*PLGTVGSRCS-SCGSP 236
           P CR    + P  C +G+C PCR  C      G +C   C  P
Sbjct: 492 PLCRHGQNQKPHKCHYGACPPCRLLCDEEYPCGHKCKLRCHGP 534


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 276 RGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDAHERAHHSEQRQRH 434
           R +QR R+ S DP+ D   + KR            Q+ +  +R  H E+R RH
Sbjct: 687 RSKQRQRYKSDDPESDQSRKGKR------------QSEENSDRETHKERRHRH 727


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 322 IPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 459
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


>At4g31440.1 68417.m04468 hypothetical protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 711 LSSCXDFVIVTALS*XPGRHALEKQIHKKLLV 616
           + SC D     +++  PG+H+LEKQ  +  LV
Sbjct: 283 MKSCVDLAGARSMNGTPGKHSLEKQQSRDELV 314


>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 241 FRNCYNVNRQYQEVSNGPDMGRKIPNRIPVRDENDCDTRAYIKDD 375
           FRN +  +  Y+++ +  D     P  +P+  ++  D    + DD
Sbjct: 3   FRNSFKSHSSYKQIRSPGDQSEPSPEHLPILHDHHPDHSGMVVDD 47


>At1g17680.2 68414.m02189 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 111 VSVLRPAVHRAVQAAQAPLPWKADRAC*LLGRGEYRQRGTVFGLPQLLQREP 266
           +SV R    +A+QA    +P K + A   L  G+YR+    F   Q+ +R P
Sbjct: 237 ISVARSYASKAIQADPDDIPLKYEYADICLNTGKYREAAETF--EQIFRRCP 286


>At1g17680.1 68414.m02188 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 111 VSVLRPAVHRAVQAAQAPLPWKADRAC*LLGRGEYRQRGTVFGLPQLLQREP 266
           +SV R    +A+QA    +P K + A   L  G+YR+    F   Q+ +R P
Sbjct: 237 ISVARSYASKAIQADPDDIPLKYEYADICLNTGKYREAAETF--EQIFRRCP 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,116
Number of Sequences: 28952
Number of extensions: 338651
Number of successful extensions: 892
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)