Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J20
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   6.1  
03_02_0163 - 6056959-6058989                                           29   6.1  
02_04_0275 - 21469391-21470650                                         29   6.1  

>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 421 PSLPPQQF*CARGVHDDRGGSRLRWQL 341
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 395 SKLLRW*RRCL-FRIQSRNTSPIPSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYT 571
           S LL W  R +    Q +N SP P+  +  ++       P P     P P R+++ ++Y 
Sbjct: 5   SSLLSWPHRAISLSFQPKNPSPSPATARVSVQDP-----PPPPSDANPSPGRSSNTSRYV 59

Query: 572 YLN 580
           ++N
Sbjct: 60  WVN 62


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +2

Query: 440 SRNTSPIPSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQ 565
           +R+T+P+  R  +P R +  +L  +  KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,803
Number of Sequences: 37544
Number of extensions: 316442
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)