Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J19
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 189 5e-49
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 80 3e-16
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 51 2e-07
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 44 2e-05
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.087
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 32 0.087
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.12
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 31 0.15
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 30 0.35
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 1.1
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 1.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.4
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 2.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.3
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.3
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.7
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 189 bits (460), Expect = 5e-49
Identities = 108/186 (58%), Positives = 130/186 (69%), Gaps = 4/186 (2%)
Frame = +3
Query: 261 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 440
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 441 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 620
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 621 LMRN---LMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XXLLGVCSCMXTRLWXT 788
++ L+ + R + P T LYRQIG GV T
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVR--EAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKT 182
Query: 789 MLAKAV 806
ML KAV
Sbjct: 183 MLVKAV 188
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXDXXNKXL-EKLLXXXHSCXVVPANRXXPPRGVLMYG 769
DE+PDV Y+D+GG D + + E + + PPRGVL+YG
Sbjct: 126 DERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYG 175
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 80.2 bits (189), Expect = 3e-16
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Frame = +3
Query: 291 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 461
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 462 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQLMR---N 632
V ST G YYV I+S +D+++L+P SV LH + ++V +L + D I++++L +
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 633 LMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XXLLGVCSCMXTRLWXTMLAKAV 806
+I LE+ + + + P TH LY ++G GV T+LAKAV
Sbjct: 189 SYADIGGLESQIQEIK--EAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/113 (25%), Positives = 57/113 (50%)
Frame = +3
Query: 261 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 440
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 441 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEAD 599
+D IV +++G Y V + +D+ L V+L + ++ +LP E D
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVD 115
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +3
Query: 342 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 518
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 519 ELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
+ +KP+ VAL S L+ +LP + D +S++ +
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMV 136
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.087
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 473 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 321
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXDXXNKXL-EKLLXXXHSCXVVPANRXXPPRGVLMYG 769
DEKP +YSDIGG + L E ++ PP+G LM+G
Sbjct: 177 DEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFG 226
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 635 DVQYSDIGGXDXX-NKXLEKLLXXXHSCXVVPANRXXPPRGVLMYG 769
D+ SDIGG D N+ LE + V PPRGVL++G
Sbjct: 170 DISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHG 215
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXDXXNKXLEKLLXXXHSCXVVPAN----RXXPPRGVLMYG 769
+EKPDV Y D+GG + +E+L + P PP+G+++YG
Sbjct: 171 EEKPDVTYGDVGG---CKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYG 220
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 626 EKPDVQYSDIGGXDXXNKXL-EKLLXXXHSCXVVPANRXXPPRGVLMYG 769
E P+V +SDIGG + + L E + PP+GVL+YG
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYG 589
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 626 EKPDVQYSDIGGXDXXNKXLEKLLXXXHSCXVVPANRXXPPRGVLMYG 769
EKP+V++ DI G + + L++ + + ++ P G+L+YG
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYG 169
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 243 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 401
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -3
Query: 404 LYALYFFLCMQIFFLQVSLFIFNVLFL 324
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 394 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 296
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 192 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 371
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 372 LHAQEEVKR 398
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 635 DVQYSDIGGXDXXNKXLEKL--LXXXHSCXVVPANRXXPPRGVLMYG 769
+V Y DIGG + +L L H + + PPRG+LMYG
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHP-QLFKSIGIKPPRGILMYG 265
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 360 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 461
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,735
Number of Sequences: 5004
Number of extensions: 55349
Number of successful extensions: 199
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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