Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J19
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 189 2e-48
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 77 2e-14
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 52 7e-07
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 52 7e-07
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 44 2e-04
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 38 0.007
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 36 0.047
AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cycl... 34 0.14
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical p... 29 4.1
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 4.1
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 4.1
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 4.1
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 4.1
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 4.1
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 4.1
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 29 4.1
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 29 4.1
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 4.1
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 4.1
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 29 4.1
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 29 5.4
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 29 5.4
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 29 5.4
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 29 5.4
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 29 5.4
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 28 7.2
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 9.5
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 28 9.5
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 189 bits (461), Expect = 2e-48
Identities = 112/185 (60%), Positives = 128/185 (69%), Gaps = 4/185 (2%)
Frame = +3
Query: 264 SEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAV 443
S D Y K L+R L L+V E+YIK E RNL+KE LHAQEEVKRIQSVPLVIGQFLEAV
Sbjct: 33 SSDDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAV 92
Query: 444 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ- 620
DQN IVGSTTGSNYYVR+LS +DRELLKP SVALHK+SNALVDVLPPEADSSI ML+
Sbjct: 93 DQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRP 152
Query: 621 -LMRNLMF-NIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XXLLGVCSCMXTRLWXTM 791
++ + +I L+ + R + P TH LY+QIG GV TM
Sbjct: 153 DEKPDISYGDIGGLDMQKQEVR--EAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTM 210
Query: 792 LAKAV 806
LAKAV
Sbjct: 211 LAKAV 215
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 673 KQEXREAVXXPPLMXSCTGK-SVXXSSGCAHVWXPGCGKLCWLKLXXSXTAXSF 831
KQE REAV P + + G PGCGK K + TA SF
Sbjct: 170 KQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASF 223
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/116 (30%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Frame = +3
Query: 282 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVK--RIQSVPLVIGQFLEAVDQNT 455
K K +R+ ++L +++E+I++++R +E +E K ++ P+ +G E +D
Sbjct: 64 KLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQH 123
Query: 456 GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
IV + GS +YV I+S +D+E L+P SV L+ ++A++ VL + D +S+++L
Sbjct: 124 AIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKL 179
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/121 (23%), Positives = 65/121 (53%)
Frame = +3
Query: 237 GPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 416
GP ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV
Sbjct: 6 GPAIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQ 64
Query: 417 VIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEA 596
++G+ L+ + + IV +T G Y V +I++E LK V+L + ++ LP E
Sbjct: 65 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREV 124
Query: 597 D 599
D
Sbjct: 125 D 125
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/121 (23%), Positives = 65/121 (53%)
Frame = +3
Query: 237 GPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 416
GP ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV
Sbjct: 14 GPAIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQ 72
Query: 417 VIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEA 596
++G+ L+ + + IV +T G Y V +I++E LK V+L + ++ LP E
Sbjct: 73 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREV 132
Query: 597 D 599
D
Sbjct: 133 D 133
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/115 (20%), Positives = 55/115 (47%)
Frame = +3
Query: 279 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 458
TK ++ ++ + + + +Q+ L + +EE+ + +G+ +A+D+
Sbjct: 31 TKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKV 90
Query: 459 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
+V + Y V + +++D L VAL + A+ +VLP + D +S++ +
Sbjct: 91 LVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 145
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/115 (20%), Positives = 55/115 (47%)
Frame = +3
Query: 279 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 458
TK ++ ++ + + + +Q+ L + +EE+ + +G+ +A+D+
Sbjct: 52 TKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKV 111
Query: 459 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
+V + Y V + +++D L VAL + A+ +VLP + D +S++ +
Sbjct: 112 LVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 166
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 39.5 bits (88), Expect = 0.003
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Frame = +3
Query: 291 KLQRMLEFLEVQEEYIKDEQ----RNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 458
K+ R+ ++L++++E+I + R L + Q+ V+ ++ P + + E D
Sbjct: 52 KMNRIHDYLQLEKEFITRQTSRHGRPLAVQKRREQQLVQSLRGTPTTLARVHELFDDEKH 111
Query: 459 IVGSTTGSN--YYVRILSTIDRELLKPSASVALHKHS------NALVDVLPPEADSSI-- 608
V GS +YV ILS +D++LL+ +A V + +A+V VL + DS+
Sbjct: 112 AVVVVEGSRREWYVPILSIVDKDLLRLNALVMVKAGGMFKTVPSAIVGVLDDKIDSNAMG 171
Query: 609 -SMLQLMRNLMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIGXXL-LGVCSCMXTRLW 782
+ + + +I E+ + + S P TH Y ++G GV
Sbjct: 172 HKVEKTPKETFDDIGGCESQIQELK--ESVELPLTHPEYYEEMGITAPKGVILYGEPGTG 229
Query: 783 XTMLAKAV 806
T+LAKAV
Sbjct: 230 KTLLAKAV 237
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 348 QRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDREL 524
QRN L + +EE++++ +G+ +A+D+ +V Y V + +ID
Sbjct: 58 QRNELNTKVRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINS 117
Query: 525 LKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
L A VAL S AL +LP + D +S++ +
Sbjct: 118 LNTGARVALRADSYALHKLLPNKVDPLVSLMMV 150
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXDXXNKXLEK--LLXXXHSCXVVPANRXXPPRGVLMYG 769
DE+P QYSDIGG D + L + +L H V PP+GVLMYG
Sbjct: 169 DERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLG-IHPPKGVLMYG 218
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXDXXNKXLEKLLXXXHSCXVVPAN----RXXPPRGVLMYG 769
+EKPDV YSD+GG +EKL + + P PP+GVL+YG
Sbjct: 169 EEKPDVTYSDVGG---CKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYG 218
>AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cyclase
protein 4 protein.
Length = 954
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/87 (26%), Positives = 42/87 (48%)
Frame = +3
Query: 306 LEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSN 485
+E L + E I D + L + + +EE K+I+ + + ++ A +G+ G G N
Sbjct: 780 VECLRLLNEIISDFDQIL--DQILDREEFKKIEKIKTISTTYMVA----SGLAGRECGDN 833
Query: 486 YYVRILSTIDRELLKPSASVALHKHSN 566
+V ++ RELL S +H +N
Sbjct: 834 SHVEAIALFARELLVKLESTNIHSFNN 860
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 402 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 581
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 582 LPPEAD 599
P D
Sbjct: 503 TPKPTD 508
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 402 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 581
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 582 LPPEAD 599
P D
Sbjct: 503 TPKPTD 508
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 241 GPANAKPFESVTWSSFSGKIIPISSIVSIAKRFRVLS 131
G N F WS+F K + SI S+ RFR LS
Sbjct: 436 GNINTALFTKGKWSTFFPKSLNFGSIPSLPSRFRTLS 472
>Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical
protein T22C1.11 protein.
Length = 444
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 321 VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIG 425
V+EE + E+ ++ KEY A + V +++ + LV+G
Sbjct: 216 VEEEVAQIEEEDVSKEYFDASKFVAQLEEMGLVLG 250
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 270 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 407
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 270 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 407
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 300 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 300 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 300 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 582 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 615
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 300 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 402 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 581
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 582 LPPEAD 599
P D
Sbjct: 503 TPKPTD 508
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 402 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 581
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 582 LPPEAD 599
P D
Sbjct: 503 TPKPTD 508
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 270 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 407
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 270 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 407
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 270 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 407
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 422
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 422
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 422
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 347 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 404
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical
protein T05A12.4b protein.
Length = 975
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 409 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 305
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
protein T05A12.4a protein.
Length = 1622
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 409 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 305
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 282 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 461
++ + + LE L+++E +++ K Y H + R ++V + +F V+Q TG+
Sbjct: 214 RFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGREEAVREI--RF--RVEQLTGL 269
Query: 462 VGST-TGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVL 584
S SN+ +L+ I +L KP+ L NA+++ L
Sbjct: 270 TCSAGIASNF---MLAKICSDLNKPNGQYVLENDKNAIMEFL 308
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 422
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 255 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK--EYLHAQEEVKRIQ 404
E E+E+ K ++ +E ++ +EE +K E+ +KK E L A+EE +++
Sbjct: 889 EKEAEEENEKLIPERKRMEAIKEEEERVKAEREKVKKEEERLKAEEEKVKVE 940
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 288 KKLQRMLEFLEVQEEYIKDEQR---NLKKEYLHAQEEVKRIQS 407
KKLQ + + +EVQ+E IK+ + NL+K + E+K +S
Sbjct: 324 KKLQELRDEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSES 366
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,719
Number of Sequences: 27780
Number of extensions: 313694
Number of successful extensions: 1069
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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