Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_J19
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 211 5e-55
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 85 5e-17
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 85 5e-17
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 56 3e-08
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 55 5e-08
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 42 7e-04
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 41 9e-04
At5g55490.1 68418.m06911 expressed protein 36 0.025
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 35 0.077
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 34 0.10
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 34 0.13
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 33 0.31
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 32 0.54
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.71
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 31 0.71
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.71
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 0.94
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 31 1.2
At5g32169.1 68418.m03692 hypothetical protein 30 2.2
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 29 2.9
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 29 2.9
At5g36780.1 68418.m04406 hypothetical protein 29 3.8
At5g36690.1 68418.m04391 hypothetical protein 29 3.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 5.0
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 5.0
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 28 6.6
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 28 6.6
At1g58120.1 68414.m06589 expressed protein 28 6.6
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.8
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.8
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 8.8
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 8.8
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 8.8
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 28 8.8
At1g77890.1 68414.m09078 expressed protein 28 8.8
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 8.8
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 8.8
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 211 bits (515), Expect = 5e-55
Identities = 117/185 (63%), Positives = 134/185 (72%), Gaps = 3/185 (1%)
Frame = +3
Query: 261 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 440
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 441 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 620
VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L
Sbjct: 86 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145
Query: 621 LMR--NLMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XXLLGVCSCMXTRLWXTM 791
++ +N I K + P TH LY+QIG GV TM
Sbjct: 146 QSEKPDVSYN-DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 204
Query: 792 LAKAV 806
LAKAV
Sbjct: 205 LAKAV 209
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 85.0 bits (201), Expect = 5e-17
Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Frame = +3
Query: 237 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 395
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 396 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 575
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 576 DVLPPEADSSISMLQLMR---NLMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XX 743
+L E D +S++++ + +I LEA + + + P TH LY IG
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIK--EAVELPLTHPELYEDIGIKP 221
Query: 744 LLGVCSCMXTRLWXTMLAKAV 806
GV T+LAKAV
Sbjct: 222 PKGVILYGEPGTGKTLLAKAV 242
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 85.0 bits (201), Expect = 5e-17
Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Frame = +3
Query: 237 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 395
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 396 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 575
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 576 DVLPPEADSSISMLQLMR---NLMFNIRILEAWXPKTRX*RSC*XPXTHVXLYRQIG-XX 743
+L E D +S++++ + +I LEA + + + P TH LY IG
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIK--EAVELPLTHPELYEDIGIKP 221
Query: 744 LLGVCSCMXTRLWXTMLAKAV 806
GV T+LAKAV
Sbjct: 222 PKGVILYGEPGTGKTLLAKAV 242
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/107 (28%), Positives = 55/107 (51%)
Frame = +3
Query: 279 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 458
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 459 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEAD 599
IV +++G Y V S +D+E L V L + ++ LP E D
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVD 122
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 55.2 bits (127), Expect = 5e-08
Identities = 32/107 (29%), Positives = 54/107 (50%)
Frame = +3
Query: 279 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 458
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 459 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEAD 599
IV +++G Y V S +D+E L V L + ++ LP E D
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVD 122
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/111 (24%), Positives = 52/111 (46%)
Frame = +3
Query: 291 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 470
+LQR+ ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 471 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
Y V I +ID L PS VAL S L VLP + D ++++++
Sbjct: 102 HPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKV 152
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 41.1 bits (92), Expect = 9e-04
Identities = 27/111 (24%), Positives = 52/111 (46%)
Frame = +3
Query: 291 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 470
+LQR L ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 471 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQL 623
Y V I +ID + PS VAL S L VLP + D ++++++
Sbjct: 102 HPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKV 152
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 192 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 371
+K ++ D + +A G Q +SE L LQR+ EF + Q+E + Q L++ +
Sbjct: 269 DKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQEKLQEVH 328
Query: 372 LHAQEEVK 395
H E K
Sbjct: 329 DHLFENSK 336
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 34.7 bits (76), Expect = 0.077
Identities = 39/151 (25%), Positives = 66/151 (43%)
Frame = +3
Query: 168 EEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDE 347
E + L D+V D+ G+ L SED ++ K R LE+LE+QEE IK+E
Sbjct: 463 EAVQATLSSLPDEVVDTVGVT--------ALSSEDSVSERK---RKLEYLEMQEELIKEE 511
Query: 348 QRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELL 527
+ ++E +E + V L A D N T + + LS +L
Sbjct: 512 EEEEEEEMAKMKESASSQKDVALDEMMASTAKDANEQAKAKTLEKHEQLCELSRA-LAVL 570
Query: 528 KPSASVALHKHSNALVDVLPPEADSSISMLQ 620
++SV++ + + ++ E D SM++
Sbjct: 571 ASASSVSMEREE--FLKLVKKEVDLYNSMVE 599
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 614 VAADEKPDVQYSDIGGXDXXNKXLEKL--LXXXHSCXVVPANRXXPPRGVLMYG 769
+ +EKPDV Y+D+GG + + ++ L H V PP+GVL YG
Sbjct: 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYG 209
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 614 VAADEKPDVQYSDIGGXDXXNKXLEKL--LXXXHSCXVVPANRXXPPRGVLMYG 769
+ +EKPD YSDIGG + + ++ L H V PP+GVL YG
Sbjct: 194 MTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLG-IDPPKGVLCYG 246
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 32.7 bits (71), Expect = 0.31
Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 4/185 (2%)
Frame = +3
Query: 135 STRNLLAIETMEEIGIILPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLE 311
S N +E + ++ D+ D L F + FD +S++ + Y K + +
Sbjct: 21 SPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYK 80
Query: 312 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGS--N 485
+ +++ +E +KK Y H +V + P+ I + L D N + +T N
Sbjct: 81 VDLISQKFKFEEYGEVKKHYPHGFHKVDK-TGRPIYI-ERLGMTDLNAFLKATTIERYVN 138
Query: 486 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQLMRNLMFNIRILEA- 662
Y+++ L P+ S+A KH ++ +L + + R+L I+ +++
Sbjct: 139 YHIKEQEK-TMSLRYPACSIASDKHVSSTTTILDVSGVGMSNFSKPARSLFMEIQKIDSN 197
Query: 663 WXPKT 677
+ P+T
Sbjct: 198 YYPET 202
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXD-XXNKXLEKLLXXXHSCXVVPANRXXPPRGVLMYG 769
DEKP Y+DIGG + + +E ++ PP+GVL+YG
Sbjct: 162 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYG 211
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/50 (24%), Positives = 32/50 (64%)
Frame = +3
Query: 255 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
+++ ++ K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 623 DEKPDVQYSDIGGXD-XXNKXLEKLLXXXHSCXVVPANRXXPPRGVLMYG 769
DEKP Y+DIGG + + +E ++ PP+GVL+YG
Sbjct: 163 DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYG 212
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 255 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 401
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 255 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFL 434
E E + L + KL + E L V+ + + L++E HAQ+ KR+ S L +
Sbjct: 292 ETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKI 351
Query: 435 EAVDQNTGIVGS 470
+ V++ ++ S
Sbjct: 352 KTVEEQCALLES 363
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +3
Query: 156 IETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 335
++ + + L D+V D+ G+ L SED ++ + R LE+LE+QEE
Sbjct: 480 VKAEDAVRATLSSLPDEVVDTVGIT--------SLPSEDPVSERR---RKLEYLEMQEEL 528
Query: 336 IKDEQRNLKKEYLHAQEEVKRIQSV 410
IK+E+ +KE +EE+ RI+ V
Sbjct: 529 IKEEE---EKE----EEELTRIKDV 546
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 383 LCMQIFFLQVSLFIFNVLFLY 321
LC ++F +++SL++F++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/71 (21%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +3
Query: 168 EEIG--IILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY-- 335
E++G ++L +++++ + + A Q DEL+ L +K++ ++E ++++EY
Sbjct: 387 EKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQS 446
Query: 336 IKDEQRNLKKE 368
++D+ ++E
Sbjct: 447 LRDKMSGTREE 457
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -3
Query: 404 LYALYFFLCMQ--IFFLQVSLFIFN--VLFLYF*EL*HSLEFLVLCV*IFRFEFIKRLRT 237
L+ Y FL IF + F+++ VL L L ++ L+LC +F F F++
Sbjct: 10 LFGFYLFLMKSSSIFPQRPFTFLYDLWVLLLVLRFLFSLIQILILC--LFNFRFVEMTSN 67
Query: 236 SKRQAF*VCDL 204
+K++ +CDL
Sbjct: 68 NKKKKTELCDL 78
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 159 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 323
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 324 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 159 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 323
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 324 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 135 STRNLLAIETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEF 314
S + L ++ EE+ + +K + + ++ L + E E E + K ++L++ E+
Sbjct: 521 SELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKF--EAEWEHIDVKREELRKEAEY 578
Query: 315 LEVQEE----YIKDEQRNLKKE 368
+ Q E Y+KDE+ N+K+E
Sbjct: 579 ITRQREAFSMYLKDERDNIKEE 600
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 282 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 461
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 462 VG 467
VG
Sbjct: 707 VG 708
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/51 (25%), Positives = 33/51 (64%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 404
D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 581 DRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 468 STTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPP 590
+TT ++Y+R L+ + ++ KP+ S + +N +D+ PP
Sbjct: 25 NTTNRDHYLRQLNKLSHKISKPTNSSSSVSVANREIDLPPP 65
>At1g58120.1 68414.m06589 expressed protein
Length = 420
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 243 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 422
Q F+ + E + + + E +E +K+E+ + K EE+ R +S+ +V
Sbjct: 313 QKFEMYKIETVNDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVD 372
Query: 423 GQFLEAVDQNTGIVG 467
FLE + G+ G
Sbjct: 373 ELFLECKPKGLGLRG 387
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 486 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 611
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 486 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 611
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 816
Score = 27.9 bits (59), Expect = 8.8
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Frame = +3
Query: 105 TFQIIK**SDSTRNLLAIETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDL--Y 278
T Q +K +D R + T +E+ +I+ + D++ + + L P + E L +
Sbjct: 245 TIQDVK--ADDLRQMFLAMT-DEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVF 301
Query: 279 TKYKKLQRM---------LEFLEVQ-EEYIKDEQR--NLKKEYLHAQEEVKRIQSVPLVI 422
KL M L F+ V E+Y + R NL KE+ E RI +
Sbjct: 302 APLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIED 361
Query: 423 GQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADS 602
QFL+ V NT V S Y +I + LK S+ + L V+ P+
Sbjct: 362 DQFLDLVTVNTD-VRSVCKETY------SIYKAALKSKGSINDYNQIAQLRIVVKPKPSV 414
Query: 603 SISMLQLMRNLMFNI--RILEAWXPKTR 680
+ L + + +++ + E W P R
Sbjct: 415 GVGPLCSPQQICYHVLGLVHEIWKPIPR 442
>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 883
Score = 27.9 bits (59), Expect = 8.8
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Frame = +3
Query: 105 TFQIIK**SDSTRNLLAIETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDL--Y 278
T Q +K +D R + T +E+ +I+ + D++ + + L P + E L +
Sbjct: 245 TIQDVK--ADDLRQMFLAMT-DEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVF 301
Query: 279 TKYKKLQRM---------LEFLEVQ-EEYIKDEQR--NLKKEYLHAQEEVKRIQSVPLVI 422
KL M L F+ V E+Y + R NL KE+ E RI +
Sbjct: 302 APLAKLLGMYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIED 361
Query: 423 GQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADS 602
QFL+ V NT V S Y +I + LK S+ + L V+ P+
Sbjct: 362 DQFLDLVTVNTD-VRSVCKETY------SIYKAALKSKGSINDYNQIAQLRIVVKPKPSV 414
Query: 603 SISMLQLMRNLMFNI--RILEAWXPKTR 680
+ L + + +++ + E W P R
Sbjct: 415 GVGPLCSPQQICYHVLGLVHEIWKPIPR 442
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 312 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 422
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 626 EKPDVQYSDIGGXDXXNKXLEKLLXXXHSCXVVPANRXXPPRGVLMYG 769
EKP++++SD+ G + + L++ + + P R L+YG
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYG 172
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 255 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 371
EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 66 ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 252 DELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 395
+ +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 67 ERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 261 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 437
E ED K ++ ++ E + +EE K E+ N KKE +EEVK ++ I Q +E
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK-VEVTTKTITQVVE 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,649
Number of Sequences: 28952
Number of extensions: 278124
Number of successful extensions: 882
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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