Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_J18
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    76   5e-15
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    75   7e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    47   3e-06
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    35   0.012
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   7.4  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   9.8  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQM 213
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYM 36



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 216 PQTRPSGVETILSTLSSAXXXXGKHVPRAVSVDXEPTVV 332
           P+T     +   ST  S     GK+VPR++ VD EP V+
Sbjct: 38  PETASQNSDGGFSTFFSETGQ-GKYVPRSIYVDLEPNVI 75


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 32/34 (94%), Positives = 32/34 (94%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 207
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG 34



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 282 GKHVPRAVSVDXEPTVV 332
           GK VPR++ VD EP V+
Sbjct: 63  GKFVPRSIYVDLEPNVI 79


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +1

Query: 109 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQM 213
           RE I++  GQ G QIG+  W+  CLEHGI PDG +
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTL 37


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 207
           MRE + +  GQ G Q+G A W     EHG+   G
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG 34



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 282 GKHVPRAVSVDXEP 323
           GK+VPRAV VD EP
Sbjct: 57  GKYVPRAVLVDLEP 70


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 95  LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 217
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 ITDLDSGLANVYRDALTHFDLSF 91
           +T +D GLA  YRD  TH  + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,345
Number of Sequences: 5004
Number of extensions: 26525
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)